Browse Element(s) Details


Os.11830.1.S1_at

Description gb:AK071469.1
DB_XREF= gi:32981492
TID=Os.11830.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097J01, full insert sequence.
FL= gb:AK071469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3035011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30300Os.50390.1.S1_at1/115+17485093..17490634Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30310OsAffx.14884.1.S1_at11/115+17492548..17495940transposon protein, putative, unclassified
LOC_Os05g30310OsAffx.30056.1.S1_at2/115+17492548..17495940transposon protein, putative, unclassified
LOC_Os05g30320NANA5+17497726..17498171glucosidase like protein, putative, expressed
LOC_Os05g30329NANA5+17500106..17500442NA
LOC_Os05g30340Os.50930.1.S1_at11/115+17500276..17507069expressed protein
LOC_Os05g30350Os.11830.1.S1_at11/115+17513995..17519526Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30360Os.47463.1.S1_x_at5/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30360Os.14491.2.S1_x_at4/115+17523455..17524463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30370NANA5+17524650..17525681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30380NANA5+17529028..17532279transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g30390OsAffx.27083.1.S1_at11/115+17533724..17540517Glycosyl hydrolase family 1 protein
LOC_Os05g30400Os.10482.1.S1_at11/115+17540516..17542514expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11830.1.S1_at--606--9771Chr05:17518863..17518887 (25 bp)
TAAGGACGACGATTCACTCAATGAC
LOC_Os05g30350
Os.11830.1.S1_at--870--791Chr05:17518918..17518942 (25 bp)
ATGGGAAGCACTCTAGCTGCACTAA
LOC_Os05g30350
Os.11830.1.S1_at--427--8911Chr05:17519096..17519120 (25 bp)
TGAGCTGTTAGCAGGATACCATTCG
LOC_Os05g30350
Os.11830.1.S1_at--892--2711Chr05:17519234..17519258 (25 bp)
AAGCACGATTAGTCCCGATGAACAT
LOC_Os05g30350
Os.11830.1.S1_at--35--6451Chr05:17519274..17519298 (25 bp)
GATCAATGAGCTTATCGGGAGTGCA
LOC_Os05g30350
Os.11830.1.S1_at--241--3991Chr05:17519289..17519313 (25 bp)
CGGGAGTGCATGATGTTCAGCTGTA
LOC_Os05g30350
Os.11830.1.S1_at--552--10452Chr05:17519345..17519369 (25 bp)
TTACTACCTTTCTATTCTTCTTTCG
LOC_Os05g30350
Os.11830.1.S1_at--1115--91Chr05:17519358..17519382 (25 bp)
ATTCTTCTTTCGTTTGTGGAACATT
LOC_Os05g30350
Os.11830.1.S1_at--740--131Chr05:17519405..17519429 (25 bp)
ATTAGTCATTACTCACAGTTAGGTG
LOC_Os05g30350
Os.11830.1.S1_at--936--6791Chr05:17519441..17519465 (25 bp)
GTTATATTCTCCTCATTTGTAGACA
LOC_Os05g30350
Os.11830.1.S1_at--977--8791Chr05:17519470..17519494 (25 bp)
TGTTCTTATTGTCATGGCTCATTAC
LOC_Os05g30350
Target Sequence 
TAAGGACGACGATTCACTCAATGACACAGATAGAGTGGACTACTTGAGTAGCTACATGGGAAGCACTCTAGCTGCACTAA
GGAATGGAGCCAATGTGAAGGGTTACTTTGTGTGGTCATTTCTTGATGTGTTTGAGCTGTTAGCAGGATACCATTCGCCA
TTCGGCCTGCATTATGTTGATTTTGAGGACCCCAATTTGCCAAGGCAGCCGAAGNTCTCTGCTCACTGGTACTCCAAGTT
CTTGAGGGGTGAAATTGGGATAAACATCGAAAGCACGATTAGTCCCGATGAACATGAACATGAACATGCTGATCAATGAG
CTTATCGGGAGTGCATGATGTTCAGCTGTAGGGGATGAAGAAAACACTATCATAGTGTTTTTTACTACCTTTCTATTCTT
CTTTCGTTTGTGGAACATTTCTTTCATAGGATTCTTATATAATTAGTCATTACTCACAGTTAGGTGTTTACTGATGAGTT
ATATTCTCCTCATTTGTAGACAGTCATGTTCTTATTGTCATGGCTCATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis