Browse Element(s) Details


Os.11831.1.S1_at

Description gb:AK062130.1
DB_XREF= gi:32972148
TID=Os.11831.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E04, full insert sequence.
FL= gb:AK098988.1 gb:AK062130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1356011/11SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g135301/11Benzoate carboxyl methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13510OsAffx.4829.1.S1_at11/116+7454886..7455585Benzoate carboxyl methyltransferase, putative
LOC_Os06g13520OsAffx.27614.1.S1_at11/116+7458468..7460721SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13530Os.11831.1.S1_at1/116+7467751..7468414Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os06g13540OsAffx.10048.1.S1_x_at1/116+7468965..7473317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13550NANA6+7473909..7474599Jasmonate O-methyltransferase, putative
LOC_Os06g13560Os.11831.1.S1_at11/116+7479074..7481195SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g13570Os.7255.1.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.7255.2.S1_at11/116+7487067..7495669expressed protein
LOC_Os06g13570Os.52782.1.S1_at1/116+7487067..7495669expressed protein
LOC_Os06g13580OsAffx.27615.2.S1_at11/116+7497332..7499518expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11831.1.S1_at--840--5031Chr06:7479951..7479975 (25 bp)
GCAGATGCTGCTCACATTCCTTGGA
LOC_Os06g13560
Os.11831.1.S1_at--7--5871Chr06:7479894..7479918 (25 bp)
GAGCCATCTATGTGCATTGCTTGCA
LOC_Os06g13560
Os.11831.1.S1_at--1013--8531Chr06:7479712..7479736 (25 bp)
TGGAGTCATTCAACCTACCACTGTA
LOC_Os06g13560
Os.11831.1.S1_at--1066--6371Chr06:7479657..7479681 (25 bp)
GATCGCATTGAACAAGCTCTTTGGC
LOC_Os06g13560
Os.11831.1.S1_at--856--51Chr06:7479632..7479656 (25 bp)
ATTGACCATATCCAGCTCTTTGAGT
LOC_Os06g13560
Os.11831.1.S1_at--918--8871Chr06:7479576..7479600 (25 bp)
TGATGGCATGTGCAGCAGCCCTCAG
LOC_Os06g13560
Os.11831.1.S1_at--769--1111Chr06:7479519..7479543 (25 bp)
AGTGTTCGAGCCCTTGCTGGCAAGC
LOC_Os06g13560
Os.11831.1.S1_at--119--331Chr06:7479479..7479503 (25 bp)
ATACTCGACGAGCTCTTTCAGAGGT
LOC_Os06g13560
Os.11831.1.S1_at--679--5991Chr06:7479440..7479464 (25 bp)
GAGAGGCACCTTGCGGAGGACAATA
LOC_Os06g13560
Os.11831.1.S1_at--784--2812Chr06:7479413..7479437 (25 bp)
AAGTACTCGGTCATAGTCTTGTTGT
LOC_Os06g13560
Os.11831.1.S1_at--76--3151Chr06:7479316..7479340 (25 bp)
AATTACGCCTGTATGCTGCTAGTTT
LOC_Os06g13560
Target Sequence 
GCAGATGCTGCTCACATTCCTTGGAAGGAAGAAAGAGGGCGTCTTGGATGGAGATCTGAGCCATCTATGTGCATTGCTTG
CAGAAGCTTTACAAGCCCTTGTTACTGAGGGCCTTGTGGAGAGGGAAAAGCTGGAGTCATTCAACCTACCACTGTATGGG
CCATCCATTGATGAAGTAAAAGCAGTGATCGCATTGAACAAGCTCTTTGGCATTGACCATATCCAGCTCTTTGAGTCAAA
CTGGGATCCCTATGATGACATGGAAAATGATGGCATGTGCAGCAGCCCTCAGCATGGGGTGAATGTTGCCAAGAGCATCA
GAGCAGTGTTCGAGCCCTTGCTGGCAAGCCATTTCGGAGAATGTATACTCGACGAGCTCTTTCAGAGGTATGCACGGAAT
GTAGAGAGGCACCTTGCGGAGGACAATACAAAGTACTCGGTCATAGTCTTGTTGTTGAACCGAAAAGTATAGATCAGACA
CAGGACACTTGGGGAATCTACATAGAAACACTACAATATATATTTTTAATTACGCCTGTATGCTGCTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis