Browse Element(s) Details


Os.11840.1.S1_at

Description gb:AK063544.1
DB_XREF= gi:32973562
TID=Os.11840.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D01, full insert sequence.
FL= gb:AK072067.1 gb:AK063544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4012011/11IDS4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40070OsAffx.5067.1.S1_at10/116+23846664..23849966oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os06g40080Os.20352.1.S1_at11/116+23852775..23857026heme oxygenase 1, putative, expressed
LOC_Os06g40090OsAffx.15855.1.S1_at11/116+23862816..23863503VQ motif family protein, expressed
LOC_Os06g40110Os.6079.1.S1_at11/116+23872485..23873728RNA polymerase Rpc34 subunit family protein, expressed
LOC_Os06g40120Os.11840.1.S1_at11/116+23874414..23878968IDS4, putative, expressed
LOC_Os06g40130NANA6+23882434..23882859hypothetical protein
LOC_Os06g40140NANA6+23889744..23890337hypothetical protein
LOC_Os06g40150Os.51150.1.S1_s_at11/116+23897260..23898819AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os06g40150Os.51150.1.S1_at8/116+23897260..23898819AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os06g40160OsAffx.16020.1.S1_at11/116+23899372..23902111hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11840.1.S1_at--401--5231Chr06:23874978..23875002 (25 bp)
GAATCCCAGTTCATCCTTGGTTAAT
LOC_Os06g40120
Os.11840.1.S1_at--691--811Chr06:23874955..23874979 (25 bp)
ATGGTGGCACTATTCCAGAGTTAGA
LOC_Os06g40120
Os.11840.1.S1_at--173--9351Chr06:23874889..23874913 (25 bp)
TCGCGGCGCTTAGGTCTCTGAAGGA
LOC_Os06g40120
Os.11840.1.S1_at--482--1631Chr06:23874857..23874881 (25 bp)
AGCGGAAGCTCTACTGTTAGTGCAT
LOC_Os06g40120
Os.11840.1.S1_at--452--6791Chr06:23874842..23874866 (25 bp)
GTTAGTGCATTCTCATTACCACCTC
LOC_Os06g40120
Os.11840.1.S1_at--914--4251Chr06:23874767..23874791 (25 bp)
CCGGTGATTGAGCAGGCCGCCAAAT
LOC_Os06g40120
Os.11840.1.S1_at--828--7031Chr06:23874712..23874736 (25 bp)
GTACACTGCATGACCTTGATCTTGA
LOC_Os06g40120
Os.11840.1.S1_at--1040--451Chr06:23874663..23874687 (25 bp)
ATCTCATTCCCCTGTCATATATTCA
LOC_Os06g40120
Os.11840.1.S1_at--657--5551Chr06:23874564..23874588 (25 bp)
GAAACCCATCATAACCATCAGACAG
LOC_Os06g40120
Os.11840.1.S1_at--902--7011Chr06:23874500..23874524 (25 bp)
GTACTTTTTGCTGATCTACATCCTC
LOC_Os06g40120
Os.11840.1.S1_at--1017--9871Chr06:23874484..23874508 (25 bp)
TACATCCTCTTTCATGAACTCTCGG
LOC_Os06g40120
Target Sequence 
GAATCCCAGTTCATCCTTGGTTAATGGTGGCACTATTCCAGAGTTAGATGAGATCGAGTACATGGAAAGCATGTATATGA
AGGGCACGGTCGCGGCGCTTAGGTCTCTGAAGGAGATCCGAAGCGGAAGCTCTACTGTTAGTGCATTCTCATTACCACCT
CTCCAGGGCGACAGTTCGCCAGAGGAGCAGCAGGAACTGTGGAATAAGATTCCGGTGATTGAGCAGGCCGCCAAATGACA
CGACCGGCATNTCACTACATGGTTATGTACACTGCATGACCTTGATCTTGACATTTGCTGGAGATAGTACCGGGGATCTC
ATTCCCCTGTCATATATTCAGTAATTTGTATGATTCCAGGATTCCTAACAGTTGTAAAATGGTGGACATGTTCAGTATAC
ATTGTAAAATCATAGAAACCCATCATAACCATCAGACAGAACTGAGATGTTTTGATTCACTATTGTGAGTTAAATCCTGT
ACTTTTTGCTGATCTACATCCTCTTTCATGAACTCTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis