Browse Element(s) Details


Os.11848.1.S1_at

Description gb:AK103742.1
DB_XREF= gi:32988951
TID=Os.11848.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.11848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138L11, full insert sequence.
FL= gb:AK103742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0338011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03330NANA11+1249529..1252981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03340Os.46692.1.S1_at5/1111+1253749..1255915hypothetical protein
LOC_Os11g03360OsAffx.30795.2.S1_at11/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.3.S1_x_at6/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.1.S1_x_at5/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.30795.3.S1_at4/1111+1260957..1266500hypothetical protein
LOC_Os11g03360OsAffx.23640.1.S1_x_at1/1111+1260957..1266500hypothetical protein
LOC_Os11g03370Os.35343.1.A1_at11/1111+1268315..1270180NAC-domain containing protein 21/22, putative, expressed
LOC_Os11g03380Os.11848.1.S1_at11/1111+1273459..1278085expressed protein
LOC_Os11g03380OsAffx.7454.1.S1_at1/1111+1273459..1278085expressed protein
LOC_Os11g03390Os.8564.1.S1_at11/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03390Os.10524.1.S1_x_at2/1111+1279055..1280691FHA domain containing protein, expressed
LOC_Os11g03400Os.9193.1.S1_s_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03400Os.9193.1.S1_at11/1111+1284453..128525240S ribosomal protein S16, putative, expressed
LOC_Os11g03410Os.15794.1.S1_at5/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03410Os.35323.1.S1_at1/1111+1287862..1291333secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os11g03420Os.16784.1.S1_at11/1111+1297251..1297987ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11848.1.S1_at--406--9771Chr11:1274239..1274263 (25 bp)
TAGAGAACCCTTCAAACCTACCATT
LOC_Os11g03380
Os.11848.1.S1_at--127--5291Chr11:1273765..1273789 (25 bp)
GAATGGAAACTCAGGGCAAGTGCTA
LOC_Os11g03380
Os.11848.1.S1_at--830--2531Chr11:1273758..1273782 (25 bp)
AACTCAGGGCAAGTGCTAGGGAAAA
LOC_Os11g03380
Os.11848.1.S1_at--516--6871Chr11:1273707..1273731 (25 bp)
GTATTGTGCATATAGTAAGTTCGCT
LOC_Os11g03380
Os.11848.1.S1_at--156--7071Chr11:1273693..1273717 (25 bp)
GTAAGTTCGCTACTTGATGCCTTAT
LOC_Os11g03380
Os.11848.1.S1_at--1113--9311Chr11:1273687..1273711 (25 bp)
TCGCTACTTGATGCCTTATGTATTT
LOC_Os11g03380
Os.11848.1.S1_at--25--1131Chr11:1273601..1273625 (25 bp)
AGTGCAAGCCTTGGGTTGTACCATA
LOC_Os11g03380
Os.11848.1.S1_at--569--2651Chr11:1273596..1273620 (25 bp)
AAGCCTTGGGTTGTACCATATAACA
LOC_Os11g03380
Os.11848.1.S1_at--716--9791Chr11:1273546..1273570 (25 bp)
TAAGCTGGAATTCAGGACTCCGAGT
LOC_Os11g03380
Os.11848.1.S1_at--539--8111Chr11:1273532..1273556 (25 bp)
GGACTCCGAGTAGCCAATAAGATGT
LOC_Os11g03380
Os.11848.1.S1_at--250--10511Chr11:1273500..1273524 (25 bp)
TTCATCTAATAAAACCTTGTGATTC
LOC_Os11g03380
Target Sequence 
TAGAGAACCCTTCAAACCTACCATTAGGCAGGTACCTCGCAGAGAAGACCAATACTACTAAACCTGGCCGTGGAAAATGT
GACGGGGAGTGCTTAGTAAAATCAACTCTGCTGGAAGGAAGCTTTGTTGGAATAGTGCTGCTGATCATCTTGATATCAGG
ACTCAAATGTATGATGGGAATTGATACCCCATCAAAGTTCGACGCTCCCCCGGAATCATAAGCCCATTTTAAAGCAGTTN
CTGAATGGAAACTCAGGGCAAGTGCTAGGGAAAAATTGAATAGCTGATGTAGCAGGAAATGTATTGTGCATATAGTAAGT
TCGCTACTTGATGCCTTATGTATTTTAATGAGCCAGCTGCAATTTGCAGTCAATTTTTGGTGGAATATTACATTTCAATA
CGTACAAGTGCAAGCCTTGGGTTGTACCATATAACACTGCCTCCAGTGTTTGCTGTGTGAATAAGCTGGAATTCAGGACT
CCGAGTAGCCAATAAGATGTTATACAATTCATCTAATAAAACCTTGTGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis