Browse Element(s) Details


OsAffx.23640.3.S1_x_at

Description gb:NM_183617.1
DB_XREF= gi:34894361
TID=OsAffx.23640.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g276907/11retrotransposon protein, putative, unclassified
LOC_Os01g631506/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g033606/11hypothetical protein
LOC_Os01g636006/11transposon protein, putative, unclassified
LOC_Os02g361002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g540501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27610NANA7+16128000..16128260hypothetical protein
LOC_Os07g27620NANA7+16129023..16129458hypothetical protein
LOC_Os07g27630OsAffx.28626.1.S1_at10/117+16133138..16133771hypothetical protein
LOC_Os07g27630OsAffx.14218.1.S1_at2/117+16133138..16133771hypothetical protein
LOC_Os07g27639NANA7+16140192..16140937NA
LOC_Os07g27650OsAffx.5465.1.S1_at11/117+16143485..16144077expressed protein
LOC_Os07g27660OsAffx.9930.1.S1_at5/117+16144621..16145652transposon protein, putative, Pong sub-class
LOC_Os07g27670OsAffx.16444.1.S1_at11/117+16146219..16147781WRKY DNA binding domain containing protein
LOC_Os07g27670OsAffx.26503.1.S1_at6/117+16146219..16147781WRKY DNA binding domain containing protein
LOC_Os07g27680NANA7+16149252..16150186hypothetical protein
LOC_Os07g27690OsAffx.23640.3.S1_x_at7/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27690OsAffx.20565.1.S1_at2/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27690OsAffx.23640.1.S1_x_at1/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27700NANA7+16157945..16160766retrotransposon protein, putative, unclassified
LOC_Os07g27710NANA7+16164094..16164471hypothetical protein
LOC_Os07g27720NANA7+16165574..16169145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27730Os.56332.1.S1_at1/117+16174137..16177348hypothetical protein
LOC_Os07g27740OsAffx.18957.1.S1_at3/117+16177953..16184448retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23640.3.S1_x_at--1142--7331NONE
GTGCACCTCGCTCACGTATGGTCTG
NONE
OsAffx.23640.3.S1_x_at--1100--1751NONE
ACCTCGCTCACGTATGGTCTGGGAC
NONE
OsAffx.23640.3.S1_x_at--253--4291NONE
CCTCGCTCACGTATGGTCTGGGACC
NONE
OsAffx.23640.3.S1_x_at--990--361106Chr12:27144746..27144770 (25 bp)
CTTGTCATGAAAGCCTTAAGGTCTC
NONE
OsAffx.23640.3.S1_x_at--436--23576Chr12:27144755..27144779 (25 bp)
AAAGCCTTAAGGTCTCTAGTCGTGG
NONE
OsAffx.23640.3.S1_x_at--2--16380Chr12:27144757..27144781 (25 bp)
AGCCTTAAGGTCTCTAGTCGTGGCC
NONE
OsAffx.23640.3.S1_x_at--445--104966Chr12:27144761..27144785 (25 bp)
TTAAGGTCTCTAGTCGTGGCCGTTC
NONE
OsAffx.23640.3.S1_x_at--112--28964Chr12:27144763..27144787 (25 bp)
AAGGTCTCTAGTCGTGGCCGTTCTG
NONE
OsAffx.23640.3.S1_x_at--686--78165Chr12:27144765..27144789 (25 bp)
GGTCTCTAGTCGTGGCCGTTCTGCA
NONE
OsAffx.23640.3.S1_x_at--47--100779Chr12:17162715..17162739 (25 bp)
TAGTCGTGGCCGTTCTGCACGGGCT
NONE
OsAffx.23640.3.S1_x_at--242--9496Chr03:3888726..3888747 (22 bp)
TCTGCACGGGCTGGATGATCCGGTT
NONE
Target Sequence 
GTGCACCTCGCTCACGTATGGTCTGGGACCTAATCTGGTGTTGGTCTGGGACCCCTCTCGTTGGCATATGGTGAACCTGT
GTCGGCTTTCGAAATGCCTTGTCATGAAAGCCTTAAGGTCTCTAGTCGTGGCCGTTCTGCACGGGCTGGATGATCCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23640.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis