Browse Element(s) Details


OsAffx.16444.1.S1_at

Description tigr:9635.m02680
TID=OsAffx.16444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AR411
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2767011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27610NANA7+16128000..16128260hypothetical protein
LOC_Os07g27620NANA7+16129023..16129458hypothetical protein
LOC_Os07g27630OsAffx.28626.1.S1_at10/117+16133138..16133771hypothetical protein
LOC_Os07g27630OsAffx.14218.1.S1_at2/117+16133138..16133771hypothetical protein
LOC_Os07g27639NANA7+16140192..16140937NA
LOC_Os07g27650OsAffx.5465.1.S1_at11/117+16143485..16144077expressed protein
LOC_Os07g27660OsAffx.9930.1.S1_at5/117+16144621..16145652transposon protein, putative, Pong sub-class
LOC_Os07g27670OsAffx.16444.1.S1_at11/117+16146219..16147781WRKY DNA binding domain containing protein
LOC_Os07g27670OsAffx.26503.1.S1_at6/117+16146219..16147781WRKY DNA binding domain containing protein
LOC_Os07g27680NANA7+16149252..16150186hypothetical protein
LOC_Os07g27690OsAffx.23640.3.S1_x_at7/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27690OsAffx.20565.1.S1_at2/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27690OsAffx.23640.1.S1_x_at1/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27700NANA7+16157945..16160766retrotransposon protein, putative, unclassified
LOC_Os07g27710NANA7+16164094..16164471hypothetical protein
LOC_Os07g27720NANA7+16165574..16169145retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16444.1.S1_at--14--1531Chr07:16146950..16146974 (25 bp)
AGCAGGGCAGATGGTTCATCCCGAA
LOC_Os07g27670
OsAffx.16444.1.S1_at--190--3711Chr07:16146983..16147007 (25 bp)
CTAGAGCTTGGAGATCGTGACGATT
LOC_Os07g27670
OsAffx.16444.1.S1_at--268--7351Chr07:16146999..16147023 (25 bp)
GTGACGATTCCTATCCCTGGAGGAA
LOC_Os07g27670
OsAffx.16444.1.S1_at--1082--91Chr07:16147040..16147063 (24 bp)
ATTCTTGGCGCCAGGTTTGCAAGGA
LOC_Os07g27670
OsAffx.16444.1.S1_at--626--1571Chr07:16147317..16147341 (25 bp)
AGCTACTACAGATGCGCCCAGATGT
LOC_Os07g27670
OsAffx.16444.1.S1_at--619--1531Chr07:16147360..16147384 (25 bp)
AGCAGGTGCAGCAATCCGACGACGA
LOC_Os07g27670
OsAffx.16444.1.S1_at--417--8551Chr07:16147396..16147420 (25 bp)
TGGAGATCACCTACATCGGCCTGCA
LOC_Os07g27670
OsAffx.16444.1.S1_at--585--1491Chr07:16147490..16147514 (25 bp)
AGCAACCAGTAGTCACCGTCTTCTG
LOC_Os07g27670
OsAffx.16444.1.S1_at--1139--1431Chr07:16147531..16147555 (25 bp)
AGAAGCTGGAGGAACATGTCCCGGC
LOC_Os07g27670
OsAffx.16444.1.S1_at--851--3791Chr07:16147619..16147643 (25 bp)
CTCGCAGTCGGAGCTTCTGTCGGAG
LOC_Os07g27670
OsAffx.16444.1.S1_at--729--971Chr07:16147705..16147729 (25 bp)
AGGAGCACAAGAAGCCGAGCGACGC
LOC_Os07g27670
Target Sequence 
AGCAGGGCAGATGGTTCATCCCGAAGAATTATACTAGAGCTTGGAGATCGTGACGATTCCTATCCCTGGAGGAAGTACGG
GCAGAAGGACATTCTTGGCGCCAGGTTTGCAAGGAGCTACTACAGATGCGCCCAGATGTTGGGCTGCACGGCGAGGAAGC
AGGTGCAGCAATCCGACGACGACCCGTCCCGGCTGGAGATCACCTACATCGGCCTGCACACCTGCGGCGGCGACCGGCCG
TCGTCGCCGGCTCCCACCAACCCCGCCGACGGCCCGCGTTGCGACGCAGCAACCAGTAGTCACCGTCTTCTGCCGTCAGC
TCTGCAGCAGAAGCTGGAGGAACATGTCCCGGCGGCGTCGGACGACATGATGATGGCCTGCACGCCGTCGTGGCTGTTCA
TACCCTCGCCGGCGTGCTCGCAGTCGGAGCTTCTGTCGGAGGGGGAGGTTCCGGAGCTGCGGGTGGTGCGGCAGGAGCCG
TATGATCCGGTGGAGCTGGTGGAGGAGCACAAGAAGCCGAGCGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis