Browse Element(s) Details


OsAffx.28626.1.S1_at

Description tigr:9635.m02676
TID=OsAffx.28626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2763010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27590NANA7+16110134..16111154retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g27610NANA7+16128000..16128260hypothetical protein
LOC_Os07g27620NANA7+16129023..16129458hypothetical protein
LOC_Os07g27630OsAffx.28626.1.S1_at10/117+16133138..16133771hypothetical protein
LOC_Os07g27630OsAffx.14218.1.S1_at2/117+16133138..16133771hypothetical protein
LOC_Os07g27639NANA7+16140192..16140937NA
LOC_Os07g27650OsAffx.5465.1.S1_at11/117+16143485..16144077expressed protein
LOC_Os07g27660OsAffx.9930.1.S1_at5/117+16144621..16145652transposon protein, putative, Pong sub-class
LOC_Os07g27670OsAffx.16444.1.S1_at11/117+16146219..16147781WRKY DNA binding domain containing protein
LOC_Os07g27670OsAffx.26503.1.S1_at6/117+16146219..16147781WRKY DNA binding domain containing protein
LOC_Os07g27680NANA7+16149252..16150186hypothetical protein
LOC_Os07g27690OsAffx.23640.3.S1_x_at7/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27690OsAffx.20565.1.S1_at2/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27690OsAffx.23640.1.S1_x_at1/117+16151498..16157629retrotransposon protein, putative, unclassified
LOC_Os07g27700NANA7+16157945..16160766retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28626.1.S1_at--469--4751Chr07:16133685..16133709 (25 bp)
GCTGAGCAGCGGGACGGTGTTGGAG
LOC_Os07g27630
OsAffx.28626.1.S1_at--803--1451Chr07:16133608..16133632 (25 bp)
AGAAGAAGCGCGTGACACTGCACAT
LOC_Os07g27630
OsAffx.28626.1.S1_at--471--2671Chr07:16133603..16133627 (25 bp)
AAGCGCGTGACACTGCACATGGACA
LOC_Os07g27630
OsAffx.28626.1.S1_at--445--7371Chr07:16133597..16133621 (25 bp)
GTGACACTGCACATGGACACGCCCA
LOC_Os07g27630
OsAffx.28626.1.S1_at--187--8531Chr07:16133584..16133608 (25 bp)
TGGACACGCCCATCGTGGCGAACAG
LOC_Os07g27630
OsAffx.28626.1.S1_at--230--9451Chr07:16133429..16133453 (25 bp)
TCGGAATCCTACTCCTCCATGGTCA
LOC_Os07g27630
OsAffx.28626.1.S1_at--765--3991Chr07:16133208..16133320 (25 bp)
CGTGGACGCCGCTTGAGAGGCTTCA
LOC_Os07g27630
OsAffx.28626.1.S1_at--163--5811Chr07:16133204..16133316 (25 bp)
GACGCCGCTTGAGAGGCTTCAGCTA
LOC_Os07g27630
OsAffx.28626.1.S1_at--1042--4211NONE
CCGCTTGAGAGGCTTCAGCTATGGC
NONE
OsAffx.28626.1.S1_at--1062--5071Chr07:16133172..16133196 (25 bp)
GCACCACGCAACAAGTAGCTCATCA
LOC_Os07g27630
OsAffx.28626.1.S1_at--604--3351Chr07:16133168..16133192 (25 bp)
CACGCAACAAGTAGCTCATCAGTTC
LOC_Os07g27630
Target Sequence 
GCTGAGCAGCGGGACGGTGTTGGAGGAGGAGAAGGTCGGCCTGCCGCCCCGGAGCGCGGCGGCGGACTCGCGGAGGAAGA
AGAAGCGCGTGACACTGCACATGGACACGCCCATCGTGGCGAACAGCCCCACCAGCAGCGGCAGGCACGGCGCGTCCGCC
GCCCACGCCACCGCCCCCACCACCGCCGCCATGCCCAGGCTGACCAGGCTCCGCCGCCGCGCCACCGCCTTGCCCCGCCG
CATCTGCACGGACGTCTCGGAATCCTACTCCTCCATGGTCACCTCCGTCGCGACGCCACCGCCCCCTCCTCCTCCTGAGC
GGCGGCGGCGGCGGCAACTTCCTCTGCTTCGTCTTCCCGGTCCTTCCTCTTCCTCGTGTTCGACGGGCGCGTGGACGCCG
CTTGAGAGGCTTCAGCTATGGCGCCGCACCACGCAACAAGTAGCTCATCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis