Browse Element(s) Details


Os.11855.1.S1_at

Description gb:AK073148.1
DB_XREF= gi:32983171
TID=Os.11855.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033004P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033004P03, full insert sequence.
FL= gb:AK073148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g449108/11MAP kinase-activating protein C22orf5 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os02g44920OsAffx.2960.1.S1_x_at11/112+27209372..27211850Protein kinase APK1A, chloroplast precursor, putative
LOC_Os02g44930Os.7523.1.S1_at11/112+27219411..27221344HMG1/2, putative, expressed
LOC_Os02g44940OsAffx.24733.1.S1_s_at11/112+27222966..27223758Rapid ALkalinization Factor family protein, expressed
LOC_Os02g44950NANA2+27226755..27227288transposon protein, putative, unclassified
LOC_Os02g44960Os.43567.1.S1_x_at1/112+27228929..27229624retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11855.1.S1_at--1082--6471Chr02:27202462..27202486 (25 bp)
GATACTGTACATGGTTTCTCGTTTT
LOC_Os02g44910
Os.11855.1.S1_at--1014--3251Chr02:27202311..27202335 (25 bp)
CAACTCCCTCTGTAATTTCGTGAAA
LOC_Os02g44910
Os.11855.1.S1_at--467--1151Chr02:27202287..27202311 (25 bp)
AGTCGCTGACACGAACTGGATGTAC
LOC_Os02g44910
Os.11855.1.S1_at--1091--8731NONE
TGTACGCCAAGGGAGGACACTTCAT
NONE
Os.11855.1.S1_at--737--951Chr02:27202254..27202278 (25 bp)
AGGACACTTCATGTGCACTCGGCAG
LOC_Os02g44910
Os.11855.1.S1_at--807--9751Chr02:27202166..27202190 (25 bp)
TAATGGTTTCATCACGGTCGTCAAA
LOC_Os02g44910
Os.11855.1.S1_at--602--5271Chr02:27202132..27202156 (25 bp)
GAATGCATGACTCATTTGCCTGTGC
LOC_Os02g44910
Os.11855.1.S1_at--104--3191NONE
CAATTGTTCCTGTCTGATTTGTTGA
NONE
Os.11855.1.S1_at--1046--7051Chr02:27201988..27202012 (25 bp)
GTAACCATGAGGTACTCCCTAGAAT
LOC_Os02g44910
Os.11855.1.S1_at--642--6071Chr02:27201955..27201979 (25 bp)
GAGTATATACCTCCCTATTAAACCG
LOC_Os02g44910
Os.11855.1.S1_at--980--9831NONE
TAAATACTACGCCACGAACTGCATT
NONE
Target Sequence 
GATACTGTACATGGTTTCTCGTTTTNTATNNATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCA
TGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTNACAGAAGTGCAAGGTATTGTACCAGAACACAAGTNCACAACTCCC
TCTGTAATTTCGTGAAAGTCGCTGACACGAACTGGATGTACGCCAAGGGAGGACACTTCATGTGCACTCGGCAGCACCAA
ACTTACCAAATACCAAAACCCTCAGAAAGTTGGAGAAAAAAAAATCTCTTAACAGAAATAATGGTTTCATCACGGTCGTC
AAAATATCAGATGAATGCATGACTCATTTGCCTGTGCAAGGAGAGAGGGAGGCAAGATTTCAGTGGACAATTGTTCCTGT
CTGATTTGTTGAATTTTGTTAGCAGAATTTATTTTGCTCTCTGGAATTGTTTATAGCTCTTGGGAAGNACTCCATGGAGA
AGTAACCATGAGGTACTCCCTAGAATATACTAGGGAGTATATACCTCCCTATTAAACCGGAAAAATACTAAATACTACGC
CACGAACTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis