Browse Element(s) Details


Os.11867.2.S1_at

Description gb:AK072435.1
DB_XREF= gi:32982458
TID=Os.11867.2
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096F07, full insert sequence.
FL= gb:AK058526.1 gb:AK072435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3394011/11hsr203J, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33920OsAffx.14950.1.S1_at11/115+19944949..19946203pentatricopeptide, putative, expressed
LOC_Os05g33930OsAffx.14951.1.S1_at11/115+19948800..19949099hypothetical protein
LOC_Os05g33940Os.11867.2.S1_at11/115+19954831..19956502hsr203J, putative, expressed
LOC_Os05g33950OsAffx.27147.1.S1_at11/115+19959348..19960795hypothetical protein
LOC_Os05g33960Os.38339.1.S1_at11/115+19962044..19967604POT family protein, expressed
LOC_Os05g33970OsAffx.14952.1.S1_at9/115+19972195..19973981hypothetical protein
LOC_Os05g33980NANA5+19977879..19983840retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11867.2.S1_at--1008--7211Chr05:19956063..19956087 (25 bp)
GTCGACCGCCACTAGACGTGGAGAT
LOC_Os05g33940
Os.11867.2.S1_at--221--3331Chr05:19956107..19956131 (25 bp)
CACCGTACGTGTAGCACCTTCCAGG
LOC_Os05g33940
Os.11867.2.S1_at--541--51Chr05:19956137..19956161 (25 bp)
ATTGTTTCTCGTCTCGTGTCATGAC
LOC_Os05g33940
Os.11867.2.S1_at--457--7451Chr05:19956152..19956176 (25 bp)
GTGTCATGACTGTCCGCCATACGTT
LOC_Os05g33940
Os.11867.2.S1_at--799--4211Chr05:19956165..19956189 (25 bp)
CCGCCATACGTTGGCCTGAGCTTGA
LOC_Os05g33940
Os.11867.2.S1_at--880--7471Chr05:19956194..19956218 (25 bp)
GTGTGTGGCTTGCTGTCCATGTCAA
LOC_Os05g33940
Os.11867.2.S1_at--549--4731Chr05:19956205..19956229 (25 bp)
GCTGTCCATGTCAAGCCGATATCAT
LOC_Os05g33940
Os.11867.2.S1_at--110--4511Chr05:19956219..19956243 (25 bp)
GCCGATATCATGTACGCATCAGTGT
LOC_Os05g33940
Os.11867.2.S1_at--10--4971Chr05:19956234..19956258 (25 bp)
GCATCAGTGTTTAGGTACGCGTTTG
LOC_Os05g33940
Os.11867.2.S1_at--641--7951Chr05:19956280..19956304 (25 bp)
GGATCATTCCCGAACAGTGGACTAG
LOC_Os05g33940
Os.11867.2.S1_at--449--9551Chr05:19956388..19956412 (25 bp)
TCTTTAATTACTCTATCCGCCATAT
LOC_Os05g33940
Target Sequence 
GTCGACCGCCACTAGACGTGGAGATCAGAGAAGCGCATCNTCTCCACCGTACGTGTAGCACCTTCCAGGNTGTNATTGTT
TCTCGTCTCGTGTCATGACTGTCCGCCATACGTTGGCCTGAGCTTGACCNTTGTGTGTGGCTTGCTGTCCATGTCAAGCC
GATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTACAAATAAATAATTGGATCATTCCCGAACAGTGGAC
TAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCA
TTTAAATCTTTAATTACTCTATCCGCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11867.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis