Browse Element(s) Details


Os.11875.1.S1_a_at

Description gb:AK065041.1
DB_XREF= gi:32975059
TID=Os.11875.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001H18, full insert sequence.
FL= gb:AK065041.1 gb:AK062069.1 gb:AK098904.1 gb:AK065992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1865011/11regulator of chromosome condensation, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18600OsAffx.19542.3.S1_x_at7/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18600OsAffx.21754.1.S1_x_at1/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18610NANA12+10748546..10749208retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18620NANA12+10751824..10752060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18630Os.21468.1.S1_at11/1112+10754001..10760219expressed protein
LOC_Os12g18640Os.8399.1.S1_at11/1112+10763904..10766326pentatricopeptide, putative, expressed
LOC_Os12g18650Os.11875.1.S1_a_at11/1112+10768344..10772796regulator of chromosome condensation, putative, expressed
LOC_Os12g18660OsAffx.19731.1.S1_at9/1112+10781674..10783543hypothetical protein
LOC_Os12g18670OsAffx.19732.1.S1_at11/1112+10787964..10788434hypothetical protein
LOC_Os12g18680NANA12+10791341..10791640hypothetical protein
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11875.1.S1_a_at--704--7491Chr12:10771623..10771647 (25 bp)
GTGGTGAATCATCAAGTCTTGGCCA
LOC_Os12g18650
Os.11875.1.S1_a_at--1133--7131Chr12:10771638..10771662 (25 bp)
GTCTTGGCCACAACACTATAACTGA
LOC_Os12g18650
Os.11875.1.S1_a_at--775--2171Chr12:10772159..10772183 (25 bp)
ACACTAATGTCCTTAGCCCGGAGTT
LOC_Os12g18650
Os.11875.1.S1_a_at--797--4511Chr12:10772174..10772198 (25 bp)
GCCCGGAGTTGGTGACTTCTTTGAA
LOC_Os12g18650
Os.11875.1.S1_a_at--391--2891Chr12:10772211..10772235 (25 bp)
AAGGGTTGCTCAGATCAGCCTCACT
LOC_Os12g18650
Os.11875.1.S1_a_at--410--1691Chr12:10772227..10772251 (25 bp)
AGCCTCACTAACTCCATTTACTGGA
LOC_Os12g18650
Os.11875.1.S1_a_at--340--1071Chr12:10772313..10772337 (25 bp)
AGGGCAGCTAGGTACCGAACTCGTC
LOC_Os12g18650
Os.11875.1.S1_a_at--430--10431Chr12:10772388..10772412 (25 bp)
TTAGGTCCAAATTGCAACGCCACTT
LOC_Os12g18650
Os.11875.1.S1_a_at--488--6331Chr12:10772431..10772455 (25 bp)
GATGCACTCTTCTAACGTTAACTTT
LOC_Os12g18650
Os.11875.1.S1_a_at--794--2231Chr12:10772457..10772481 (25 bp)
AAATTGATTGCATTGCGCGCCCTTT
LOC_Os12g18650
Os.11875.1.S1_a_at--719--9091Chr12:10772511..10772535 (25 bp)
TGCTCTGCAGCTAATCCTTGTGAAA
LOC_Os12g18650
Target Sequence 
GTGGTGAATCATCAAGTCTTGGCCACAACACTATAACTGAGGGTAATAATAGGCACACTAATGTCCTTAGCCCGGAGTTG
GTGACTTCTTTGAAAAGAACAAATGAAAGGGTTGCTCAGATCAGCCTCACTAACTCCATTTACTGGAATGCACATACATT
TGCACTGACAGATTCAGGAAAACTCTATGCGTTTGGTGCAGGGGACAAAGGGCAGCTAGGTACCGAACTCGTCGCGCAGN
AAAGCGAGAGGGGGACACCGGAGCGTGTTGAAATTGACCTCAGTTAGGTCCAAATTGCAACGCCACTTCATCTCCTTTTC
TCTCCAGATGCACTCTTCTAACGTTAACTTTCAAATTGATTGCATTGCGCGCCCTTTAGCTTGTTGGCTGTTCATCAGCC
TCATCCTGCTCTGCAGCTAATCCTTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11875.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis