Browse Element(s) Details


Os.11984.1.S1_at

Description gb:AK106125.1
DB_XREF= gi:32991334
TID=Os.11984.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F03, full insert sequence.
FL= gb:AK067330.1 gb:AK104406.1 gb:AK106125.1 gb:AK104294.1 gb:AK104937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4182011/11expressed protein
LOC_Os07g418103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein
LOC_Os07g41820Os.11984.1.S2_at11/117+25047421..25049880expressed protein
LOC_Os07g41820Os.11984.1.S1_at11/117+25047421..25049880expressed protein
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11984.1.S1_at--513--1751Chr07:25048652..25048676 (25 bp)
ACCTCTGAGAGGTTTGCCTTTGGTT
LOC_Os07g41820
Os.11984.1.S1_at--924--2531Chr07:25048681..25048705 (25 bp)
AACTCTAGTTGCCTTGTTTGATCGG
LOC_Os07g41820
Os.11984.1.S1_at--685--5192Chr07:25048784..25048808 (25 bp)
GAATTGTACCTGACTACCTGAACTA
LOC_Os07g41820
Os.11984.1.S1_at--962--932Chr07:25048808..25048832 (25 bp)
AGGAATTAGGATGGCCGCTCTTGCT
LOC_Os07g41820
Os.11984.1.S1_at--734--9551Chr07:25048826..25048850 (25 bp)
TCTTGCTTGGACGTCTACCGAACAA
LOC_Os07g41820
Os.11984.1.S1_at--1033--2771Chr07:25048849..25048873 (25 bp)
AAGAGCTTGCTGTCTTCAGTGTTCA
LOC_Os07g41820
Os.11984.1.S1_at--222--9651Chr07:25048864..25048888 (25 bp)
TCAGTGTTCATCTTTTCTTCTCGCT
LOC_Os07g41820
Os.11984.1.S1_at--461--9791Chr07:25048921..25048945 (25 bp)
TAAGACTCGCAACTCGGTGCTATGC
LOC_Os07g41820
Os.11984.1.S1_at--1107--5651Chr07:25048988..25049012 (25 bp)
GACATGCCACTGCACAATCTTTTAG
LOC_Os07g41820
Os.11984.1.S1_at--509--5332Chr07:25049051..25049075 (25 bp)
GAAGTATTTTAGTCTTGCTCCAATT
LOC_Os07g41820
Os.11984.1.S1_at--163--8731Chr07:25049085..25049109 (25 bp)
TGTCTCGCAGAATCCTCGTAGGCAT
LOC_Os07g41820
Target Sequence 
ACCTCTGAGAGGTTTGCCTTTGGTTCGAAAACTCTAGTTGCCTTGTTTGATCGGTTGAGAATAATACAATCCTTGTGATT
GGGTGTGCTGTGGCCTGTGGTTAGCAATGGCAATTGATTTTGAAATGAATAAGAATTGTACCTGACTACCTGAACTAGGA
ATTAGGATGGCCGCTCTTGCTTGGACGTCTACCGAACAAGAGCTTGCTGTCTTCAGTGTTCATCTTTTCTTCTCGCTCTG
CAACTGCAAATTTGTATGTCAGATAATTTTAAGACTCGCAACTCGGTGCTATGCCTCTCATGCCTCCCTTCCCCCATTAA
GCATGGAGGAACCACTGACATGCCACTGCACAATCTTTTAGGATTTGATATTCTTTTGACTTAGTATTATGCACCCATAG
AAGTATTTTAGTCTTGCTCCAATTCTGTATTTCTGTCTCGCAGAATCCTCGTAGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis