Browse Element(s) Details


Os.11995.1.S1_at

Description gb:AK058890.1
DB_XREF= gi:32968908
TID=Os.11995.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.11995 (NCBI UniGene Cluster)
UG_TITLE=4-hydroxyphenylpyruvate dioxygenase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D10, full insert sequence.
FL= gb:AK058890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0716010/114-hydroxyphenylpyruvate dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07110NANA2+3655345..3655722Auxin responsive protein
LOC_Os02g07120Os.17204.1.S1_at11/112+3659130..3669320HEAT repeat family protein, expressed
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0010236biological_processplastoquinone biosynthesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0003868molecular_function4-hydroxyphenylpyruvate dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11995.1.S1_at--1055--5031Chr02:3678799..3678823 (25 bp)
GCAGATCAACGAGTGCCAGGAGCTC
LOC_Os02g07160
Os.11995.1.S1_at--328--1271Chr02:3678734..3678758 (25 bp)
AGATCTTCACCAAGCCAGTAGGAGA
LOC_Os02g07160
Os.11995.1.S1_at--806--3391NONE
CAGTAGGAGACAGGCCAACCTTTTT
NONE
Os.11995.1.S1_at--865--2511Chr02:3677845..3677869 (25 bp)
AACTTCTCGGAGCTGTTCAAGTCCA
LOC_Os02g07160
Os.11995.1.S1_at--936--6071Chr02:3677815..3677839 (25 bp)
GAGTATGAGAAATCCCTTGAAGCCA
LOC_Os02g07160
Os.11995.1.S1_at--287--2731Chr02:3677791..3677815 (25 bp)
AAGCAAGCCCCTACAGTTCAAGGAT
LOC_Os02g07160
Os.11995.1.S1_at--1067--551Chr02:3677768..3677792 (25 bp)
ATCCTAGGTAGGAACTGGAGGCCTG
LOC_Os02g07160
Os.11995.1.S1_at--853--2333Chr01:38023286..38023307 (22 bp)
AAAGATGTGCTTTCACTGCTTTGTG
NONE
Os.11995.1.S1_at--47--3851Chr02:3677682..3677706 (25 bp)
CTGCTTTGTGATATGTGTCATGCAA
LOC_Os02g07160
Os.11995.1.S1_at--728--8731Chr02:3677573..3677597 (25 bp)
TGTAACCTAGTGTTGGCATTGCTGC
LOC_Os02g07160
Os.11995.1.S1_at--669--10711Chr02:3677555..3677579 (25 bp)
TTGCTGCTGTACAATCTTGCTTGGA
LOC_Os02g07160
Target Sequence 
GCAGATCAACGAGTGCCAGGAGCTCGGGGTGCTCGTGGACAGGGATGACCAGGGGGTGTTGCTCCAGATCTTCACCAAGC
CAGTAGGAGACAGGCCAACCTTTTTNTTGGAGATGATACAAAGGATTGGGTGCATGGAGAAGGATGAGAGTGGGCAGGAG
TACCAGAAGGGCGGCTGCGGCGGGTTTGGGAAGGGCAACTTCTCGGAGCTGTTCAAGTCCATTGAGGAGTATGAGAAATC
CCTTGAAGCCAAGCAAGCCCCTACAGTTCAAGGATCCTAGGTAGGAACTGGAGGCCTGGAGCAACAGATGTAACCAGTGT
ATTTGTATTATGGAGCAGAAGAAAAAAGATGTGCTTTCACTGCTTTGTGATATGTGTCATGCAAGTTGATGTTGTAATTT
GTGGAAGCTGAAGACAAATGATGGTACAATCNCTGTAATAGATAATAGACATGGATCACATACAAGAATGTAACCTAGTG
TTGGCATTGCTGCTGTACAATCTTGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis