Browse Element(s) Details


Os.12016.1.S1_at

Description gb:AK121645.1
DB_XREF= gi:37991268
TID=Os.12016.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058C09, full insert sequence.
FL= gb:AK121645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5010011/11SET domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50040Os.53973.1.S1_at11/112+30567534..30571392Endoglucanase 1 precursor, putative, expressed
LOC_Os02g50050OsAffx.3023.1.S1_at11/112+30571771..30572422expressed protein
LOC_Os02g50060Os.55658.1.S1_at11/112+30574059..30575000EF hand family protein, expressed
LOC_Os02g50070OsAffx.3024.1.S1_at11/112+30577458..30578162hypothetical protein
LOC_Os02g50080OsAffx.12572.1.S1_at11/112+30579896..30580315hypothetical protein
LOC_Os02g50090NANA2+30582283..30585399retrotransposon protein, putative, unclassified
LOC_Os02g50100Os.12016.1.S1_at11/112+30587626..30590282SET domain-containing protein, putative, expressed
LOC_Os02g50110Os.57343.1.S1_at11/112+30590531..30591132expressed protein
LOC_Os02g50120NANA2+30607894..30609043retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0030785molecular_function[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12016.1.S1_at--484--1531Chr02:30589591..30589615 (25 bp)
AGCAGGAGTTTCTTCGCCTAACTTT
LOC_Os02g50100
Os.12016.1.S1_at--658--9791Chr02:30589609..30589633 (25 bp)
TAACTTTTCAGCTCCAGCCAAGTGG
LOC_Os02g50100
Os.12016.1.S1_at--826--10031Chr02:30589843..30589867 (25 bp)
TAGATGGGCGCTTATTGGCTGCTTT
LOC_Os02g50100
Os.12016.1.S1_at--540--10411Chr02:30589873..30589897 (25 bp)
TTATTATTGCAGCTGATCCGGACGC
LOC_Os02g50100
Os.12016.1.S1_at--846--551Chr02:30589888..30589912 (25 bp)
ATCCGGACGCTGTGAGTGGCCATGA
LOC_Os02g50100
Os.12016.1.S1_at--525--7551Chr02:30589903..30589927 (25 bp)
GTGGCCATGACCTCAAGACTTTGAT
LOC_Os02g50100
Os.12016.1.S1_at--996--5971Chr02:30589938..30589962 (25 bp)
GAGAAAGCTCCATTAGGCCCAGCTG
LOC_Os02g50100
Os.12016.1.S1_at--542--5431Chr02:30590061..30590085 (25 bp)
GAACCACCTCTTACTACTGAACTAG
LOC_Os02g50100
Os.12016.1.S1_at--120--1611Chr02:30590110..30590134 (25 bp)
AGCTGCTTCTCCTGGATGTGATACA
LOC_Os02g50100
Os.12016.1.S1_at--675--4851Chr02:30590159..30590183 (25 bp)
GCTAGCTCTAGACAAATCCACCGTG
LOC_Os02g50100
Os.12016.1.S1_at--1018--4871Chr02:30590208..30590232 (25 bp)
GCTTTCTCGGACAATCAATTACCCT
LOC_Os02g50100
Target Sequence 
AGCAGGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAG
AGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGATGGGCGCTTATTGGCTGCTTTAAGGGTTATTATT
GCAGCTGATCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGC
TGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAG
ACGAGGCCATACTAAAANGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTC
CTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTT
TGGAATTGCTTTCTCGGACAATCAATTACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis