Browse Element(s) Details


Os.12018.1.S1_at

Description gb:AK062716.1
DB_XREF= gi:32972734
TID=Os.12018.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU057494(S21489)~unknown protein (P0560B08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C08, full insert sequence.
FL= gb:AK062716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4273011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42700Os.18196.1.S1_at11/117+25561731..25566146Paramyosin, putative, expressed
LOC_Os07g42714Os.12778.1.S2_at11/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.19542.3.S1_x_at10/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.9949.1.S1_at1/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42730Os.12018.1.S1_at11/117+25583333..25584539EF hand family protein, expressed
LOC_Os07g42740Os.31290.1.S1_at11/117+25589533..25591115expressed protein
LOC_Os07g42750Os.51867.1.S1_at10/117+25599947..25604818DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12018.1.S1_at--1085--8551Chr07:25583492..25583516 (25 bp)
TGGATCGCTTCAAGGCGTGGCTGAT
LOC_Os07g42730
Os.12018.1.S1_at--24--7551Chr07:25583508..25583532 (25 bp)
GTGGCTGATGCATTTCGACGGCGAC
LOC_Os07g42730
Os.12018.1.S1_at--1108--5731Chr07:25583659..25583683 (25 bp)
GACGGCGAGATCAAGCACCTCATGG
LOC_Os07g42730
Os.12018.1.S1_at--343--5091Chr07:25583673..25583697 (25 bp)
GCACCTCATGGACCTGACCGAGAAG
LOC_Os07g42730
Os.12018.1.S1_at--911--7491Chr07:25583776..25583800 (25 bp)
GTGGTCTCGGCGTGCCAGTTCCAGA
LOC_Os07g42730
Os.12018.1.S1_at--289--9491Chr07:25583815..25583839 (25 bp)
TCTCGTACCATTGACCTACGCAAAT
LOC_Os07g42730
Os.12018.1.S1_at--357--1731Chr07:25583850..25583874 (25 bp)
ACCAGTACTTTCTAGTACCGCCAAT
LOC_Os07g42730
Os.12018.1.S1_at--313--6991Chr07:25583864..25583888 (25 bp)
GTACCGCCAATAATTAGATCTCGTT
LOC_Os07g42730
Os.12018.1.S1_at--726--7591Chr07:25583919..25583943 (25 bp)
GGGAATAATTCCTCACCGGGATAAT
LOC_Os07g42730
Os.12018.1.S1_at--251--10631Chr07:25583952..25583976 (25 bp)
TTCGATATTTCGATTAATGCCCAGG
LOC_Os07g42730
Os.12018.1.S1_at--905--10411Chr07:25584027..25584051 (25 bp)
TTATTCCCTCTATAATCCACTAGTC
LOC_Os07g42730
Target Sequence 
TGGATCGCTTCAAGGCGTGGCTGATGCATTTCGACGGCGACGGCGACGAGCATATCAGCCGGAGGGAGCTCCGGGACGCC
ATCCGCTCCGGCGGCGCCCGGTTCGCCACCGTCCGGGCGTGGGTCAACCTCTACCTCGCCGACAAGAACCGGAACGGCGT
CATCGACGACGGCGAGATCAAGCACCTCATGGACCTGACCGAGAAGGACCTCGACCTCAGCAAGCTGCAGCCCACGCCTG
CGGCAGCACGGCCGACGGCGACCGGCGCCCCGCCGGCCATGGTGGTGGTCTCGGCGTGCCAGTTCCAGACGACTCCTCTC
GTCTCTCGTACCATTGACCTACGCAAATTAACTGCCAAACCAGTACTTTCTAGTACCGCCAATAATTAGATCTCGTTCAG
TTTGGAGGGGGTTAAAAAGGATTAAGAGGGAATAATTCCTCACCGGGATAATAAACTCTATTCGATATTTCGATTAATGC
CCAGGCGAGAAGGATTGAAGAAGATTCATTCCACACTAAATTATATGGTGTAGAATTATTCCCTCTATAATCCACTAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis