Browse Element(s) Details


Os.12032.1.S1_at

Description gb:AK058773.1
DB_XREF= gi:32968791
TID=Os.12032.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-A01, full insert sequence.
FL= gb:AK058773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0844011/11WRKY transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08430NANA2+4531333..4531860hypothetical protein
LOC_Os02g08440Os.12032.1.S1_at11/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08440OsAffx.24166.1.S1_at9/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08450NANA2+4549904..4552374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08460OsAffx.11942.1.S1_at11/112+4557017..4557265hypothetical protein
LOC_Os02g08470OsAffx.2547.1.S1_at11/112+4558839..4559965hypothetical protein
LOC_Os02g08480Os.18010.1.S1_at11/112+4563066..4566600Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os02g08490Os.5574.1.S1_s_at11/112+4567614..4572910Chaperone clpB 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12032.1.S1_at--955--9491Chr02:4544404..4544428 (25 bp)
TCTCGCCGACCAAGGATTGACGATT
LOC_Os02g08440
Os.12032.1.S1_at--579--5771Chr02:4544422..4544446 (25 bp)
GACGATTGCTACTGATCGACGCGGC
LOC_Os02g08440
Os.12032.1.S1_at--1045--5791Chr02:4544439..4544463 (25 bp)
GACGCGGCGGATTCGATCGCTTCTT
LOC_Os02g08440
Os.12032.1.S1_at--1146--10551Chr02:4544459..4544483 (25 bp)
TTCTTCTTGCAACTGCGGGCATGGC
LOC_Os02g08440
Os.12032.1.S1_at--488--9511Chr02:4544510..4544534 (25 bp)
TCTCTGTTCTTGGTGGCGCCAGCAA
LOC_Os02g08440
Os.12032.1.S1_at--232--2751Chr02:4544533..4544557 (25 bp)
AAGAACACGATCGACGCGGTGTCCA
LOC_Os02g08440
Os.12032.1.S1_at--642--6291Chr02:4544604..4544628 (25 bp)
GATGATTCGCTGTATATAACCTAGA
LOC_Os02g08440
Os.12032.1.S1_at--240--6391Chr02:4544655..4544679 (25 bp)
GATCGACGAGCAACATTTTCGGCCG
LOC_Os02g08440
Os.12032.1.S1_at--92--1111Chr02:4544812..4544836 (25 bp)
AGTGTACGTAGTGCAGTCCTTTTGA
LOC_Os02g08440
Os.12032.1.S1_at--1125--9731Chr02:4544844..4544868 (25 bp)
TAATCCCAAATTTGCTTCGGTCCCG
LOC_Os02g08440
Os.12032.1.S1_at--57--4911Chr02:4544857..4544881 (25 bp)
GCTTCGGTCCCGAACAATTCAACGA
LOC_Os02g08440
Target Sequence 
TCTCGCCGACCAAGGATTGACGATTGCTACTGATCGACGCGGCGGATTCGATCGCTTCTTCTTGCAACTGCGGGCATGGC
CATTGCCATCCTCTCCTGTCTCTGCCTCTCTGTTCTTGGTGGCGCCAGCAAGAACACGATCGACGCGGTGTCCATCCATG
GCGGAGTTCGATCGATCGATTGATCGGCTAGGGAGGAATTGATGATTCGCTGTATATAACCTAGAATTTTTACACGATTA
CTCGAGGGATAGATCGACGAGCAACATTTTCGGCCGGCGCCCATGGCTGATCAACCAACGATCATCGGCGGCGGCCGGAC
GTGAGCAAGACGATTCAGAAAAAAATTCAGATATTTGCGTCGGCAAAAGACGCTTGTAACATGTAGAGTAGGGAGGAAAA
TTATTTGAAGTGTACGTAGTGCAGTCCTTTTGAGCAAAATTAATCCCAAATTTGCTTCGGTCCCGAACAATTCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis