Browse Element(s) Details


Os.12042.1.S1_at

Description gb:AK121056.1
DB_XREF= gi:37990679
TID=Os.12042.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein S11 (OJ1773_H01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056G18, full insert sequence.
FL= gb:AK121056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5235411/1140S ribosomal protein S11, putative, expressed
LOC_Os07g377809/1140S ribosomal protein S11, putative, expressed
LOC_Os07g377708/1140S ribosomal protein S11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed
LOC_Os04g52370Os.6313.1.S1_at11/114+30889854..30894370UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed
LOC_Os04g52390Os.53340.1.S1_at11/114+30909247..30914331Potassium transporter 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12042.1.S1_at--1092--5354Chr04:30888352..30888376 (25 bp)
GAAGAGGCATTCCAACATTCCGGCT
LOC_Os04g52354
Os.12042.1.S1_at--427--7174Chr04:30888380..30888404 (25 bp)
GTCTCCCCATGCTTCCGTGTCAAGG
LOC_Os04g52354
Os.12042.1.S1_at--869--8414Chr04:30888580..30888604 (25 bp)
GGCCGCTGTCGAAAACTGTGAGGTT
LOC_Os04g52354
Os.12042.1.S1_at--804--7254Chr04:30888609..30888633 (25 bp)
GTCCTGAAGGTCATCCCAGCTGGAT
LOC_Os04g52354
Os.12042.1.S1_at--457--1034Chr04:30888616..30888640 (25 bp)
AGGTCATCCCAGCTGGATCCACCGG
LOC_Os04g52354
Os.12042.1.S1_at--402--1294Chr04:30888713..30888737 (25 bp)
AGATCCTTTTGCTTGAAGTCCTGGC
LOC_Os04g52354
Os.12042.1.S1_at--540--3674Chr04:30888718..30888742 (25 bp)
CTTTTGCTTGAAGTCCTGGCAGGGC
LOC_Os04g52354
Os.12042.1.S1_at--280--3294Chr04:30886219..30886243 (25 bp)
CAAAGTTTTGTTAAGATGCCTGTTA
LOC_Os04g52354
Os.12042.1.S1_at--793--6353Chr04:30886233..30886257 (25 bp)
GATGCCTGTTAATGCTCGATATGCT
LOC_Os04g52354
Os.12042.1.S1_at--411--633Chr04:30886244..30886268 (25 bp)
ATGCTCGATATGCTGTGATCCTTGA
LOC_Os04g52354
Os.12042.1.S1_at--778--613Chr04:30886253..30886277 (25 bp)
ATGCTGTGATCCTTGATTTTCCTGG
LOC_Os04g52354
Target Sequence 
GAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGT
GCAGGCCGCTGTCGAAAACTGTGAGGTTCAACGTCCTGAAGGTCATCCCAGCTGGATCCACCGGCGGCAGCGGNGGCAAG
AAGGCCNTTCACCGCAGCATGAGCTTGTACTCNCATTATTCATGGGTAGTTTATAGNCAGATCCTTTTGCTTGAAGTCCT
GGCAGGGCNTGGTGTTTTGACCCTATCGATTTGGATATTGTTCCCAACNAAACGAAGTCTTNTCATCAGAACGTGTTTTA
TGGAATCTACTCTATGCAAAGTTTTGTTAAGATGCCTGTTAATGCTCGATATGCTGTGATCCTTGATTTTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis