Browse Element(s) Details


Os.12058.1.S1_at

Description gb:AK058271.1
DB_XREF= gi:32968289
TID=Os.12058.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B08, full insert sequence.
FL= gb:AK058271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4987011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49850OsAffx.12569.1.S1_at11/112+30461715..30462567Chemocyanin precursor, putative, expressed
LOC_Os02g49860NANA2+30463622..30464149ABA induced plasma membrane protein PM 19, putative
LOC_Os02g49870Os.12058.1.S1_at11/112+30466113..30467246expressed protein
LOC_Os02g49880Os.50246.1.S1_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.2.S1_x_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.1.S2_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49890NANA2+30475960..30478891retrotransposon protein, putative, unclassified
LOC_Os02g49900NANA2+30479221..30485346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49910OsAffx.32072.3.S1_at11/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.1.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_at1/112+30489558..30491473hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009941cellular_componentchloroplast envelope
GO:0030093cellular_componentphotosystem I (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12058.1.S1_at--167--4611Chr02:30466415..30466439 (25 bp)
GCGACGAGCTCATCGAAGACCTGAA
LOC_Os02g49870
Os.12058.1.S1_at--25--2351Chr02:30466438..30466551 (25 bp)
AAAGCTAAGTGGGACGCCGTTGAGA
LOC_Os02g49870
Os.12058.1.S1_at--836--6651Chr02:30466545..30466569 (25 bp)
GTTGAGAACAAGTCCACCGTCCTCA
LOC_Os02g49870
Os.12058.1.S1_at--207--4471Chr02:30466637..30466757 (25 bp)
GCCTCTGCTTCCCAAGTTCATGGAG
LOC_Os02g49870
Os.12058.1.S1_at--738--4491Chr02:30466943..30466967 (25 bp)
GCCGACGACGTCGATTCTTTGAAGA
LOC_Os02g49870
Os.12058.1.S1_at--1116--2411Chr02:30466989..30467013 (25 bp)
AAAAAATGCCGTCGTCTGCACCAAT
LOC_Os02g49870
Os.12058.1.S1_at--787--8171Chr02:30467019..30467043 (25 bp)
GGAACGATTCTTTGGATCGCACATT
LOC_Os02g49870
Os.12058.1.S1_at--459--2031Chr02:30467072..30467096 (25 bp)
ACTAGTGTTTGGTACCGCGAAGCTT
LOC_Os02g49870
Os.12058.1.S1_at--142--10411Chr02:30467099..30467123 (25 bp)
TTTTGTTCCTTTCCTTGATGGGCAA
LOC_Os02g49870
Os.12058.1.S1_at--554--2131Chr02:30467126..30467150 (25 bp)
ACAGTGTCTTCACGTGTAGATCGAA
LOC_Os02g49870
Os.12058.1.S1_at--595--131Chr02:30467160..30467184 (25 bp)
ATTACGAATTGCGTCTCGACTAATT
LOC_Os02g49870
Target Sequence 
GCGACGAGCTCATCGAAGACCTGAAAGCTAAGTGGGACGCCGTTGAGAACAAGTCCACCGTCCTCACGTACGCCGGCGGC
GCCATCNTCGCCCTCTGGCTGTCGTCCGTCATCGTCGGCGCCGTCAANTCCGTGCCTCTGCTTCCCAAGTTCATGGAGCT
CGTCGGGCTCGGGTACACAGGCTGGTTTGTGTACCGCTACCTCCTCTTCAAGGAAAGCAGGAAGGAATTGGCCGACGACG
TCGATTCTTTGAAGAAGAGGATTGCTGGGACAGAGTAAAAAATGCCGTCGTCTGCACCAATTTTTTGGAACGATTCTTTG
GATCGCACATTGCAGAGACCAAAACCCGTTGTTTAGAGTACTAGTGTTTGGTACCGCGAAGCTTTGTTTTGTTCCTTTCC
TTGATGGGCAATAACAGTGTCTTCACGTGTAGATCGAATTAATAATAATTACGAATTGCGTCTCGACTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis