Browse Element(s) Details


Os.12106.1.S1_at

Description gb:AK059872.1
DB_XREF= gi:32969890
TID=Os.12106.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F02, full insert sequence.
FL= gb:AK059872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4878011/11Oxalate oxidase 2 precursor, putative, expressed
LOC_Os12g318801/11Eukaryotic translation initiation factor 5B, putative, expressed
LOC_Os03g487701/11Oxalate oxidase 2 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48710Os.27383.2.S1_at10/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27383.2.S1_x_at9/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27235.2.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48710Os.30055.1.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48720OsAffx.13413.1.S1_at10/113+27717552..27718624hypothetical protein
LOC_Os03g48730OsAffx.13414.1.S1_at11/113+27721532..27721801hypothetical protein
LOC_Os03g48740NANA3+27724513..27727600Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os03g48750Os.54370.1.S1_at11/113+27728273..27729269Oxalate oxidase GF-2.8 precursor, putative, expressed
LOC_Os03g48760NANA3+27733065..27733754Oxalate oxidase GF-2.8 precursor, putative
LOC_Os03g48770Os.12106.1.S1_at1/113+27737404..27738087Oxalate oxidase 2 precursor, putative
LOC_Os03g48780Os.12106.1.S1_at11/113+27740207..27741221Oxalate oxidase 2 precursor, putative, expressed
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12106.1.S1_at--1032--612Chr03:27740410..27740434 (25 bp)
ATGCTGGTGTAGTTGAGCTGCTCAA
LOC_Os03g48780
Os.12106.1.S1_at--748--9631Chr03:27740377..27740401 (25 bp)
TCACCGGCGGGTACTAATTAATCCG
LOC_Os03g48780
Os.12106.1.S1_at--856--551Chr03:27740357..27740381 (25 bp)
ATCCGAGAGCATTTTCATGGTGTTC
LOC_Os03g48780
Os.12106.1.S1_at--1035--8791Chr03:27740337..27740361 (25 bp)
TGTTCTCTGCTACCAGCAGCATACT
LOC_Os03g48780
Os.12106.1.S1_at--1020--1511Chr03:27740323..27740347 (25 bp)
AGCAGCATACTTTAAGCTCCCGTTG
LOC_Os03g48780
Os.12106.1.S1_at--630--10491Chr03:27740312..27740336 (25 bp)
TTAAGCTCCCGTTGTGTGGTTGCAT
LOC_Os03g48780
Os.12106.1.S1_at--553--9311Chr03:27740306..27740330 (25 bp)
TCCCGTTGTGTGGTTGCATGTTATT
LOC_Os03g48780
Os.12106.1.S1_at--658--7511Chr03:27740297..27740321 (25 bp)
GTGGTTGCATGTTATTGGATTGAAT
LOC_Os03g48780
Os.12106.1.S1_at--453--6591Chr03:27740280..27740304 (25 bp)
GATTGAATAAACTTTCTCCCATGTT
LOC_Os03g48780
Os.12106.1.S1_at--556--3091Chr03:27740275..27740299 (25 bp)
AATAAACTTTCTCCCATGTTATGGG
LOC_Os03g48780
Os.12106.1.S1_at--670--2292Chr12:19174084..19174531 (25 bp)
AAATGTAATACTTCTTTGTGATGTT
LOC_Os12g31880
Target Sequence 
ATGCTGGTGTAGTTGAGCTGCTCAAGTCCAANTTCACCGGCGGGTACTAATTAATCCGAGAGCATTTTCATGGTGTTCTC
TGCTACCAGCAGCATACTTTAAGCTCCCGTTGTGTGGTTGCATGTTATTGGATTGAATAAACTTTCTCCCATGTTATGGG
AATGGAAATAAAATGTAATACTTCTTTGTGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis