Browse Element(s) Details


Os.27383.2.S1_at

Description gb:AK109332.2
DB_XREF= gi:42821649
TID=Os.27383.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F11, full insert sequence.
FL= gb:AK109332.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4871010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48710Os.27383.2.S1_at10/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27383.2.S1_x_at9/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27235.2.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48710Os.30055.1.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48720OsAffx.13413.1.S1_at10/113+27717552..27718624hypothetical protein
LOC_Os03g48730OsAffx.13414.1.S1_at11/113+27721532..27721801hypothetical protein
LOC_Os03g48740NANA3+27724513..27727600Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os03g48750Os.54370.1.S1_at11/113+27728273..27729269Oxalate oxidase GF-2.8 precursor, putative, expressed
LOC_Os03g48760NANA3+27733065..27733754Oxalate oxidase GF-2.8 precursor, putative
LOC_Os03g48770Os.12106.1.S1_at1/113+27737404..27738087Oxalate oxidase 2 precursor, putative
LOC_Os03g48780Os.12106.1.S1_at11/113+27740207..27741221Oxalate oxidase 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27383.2.S1_at--798--4511NONE
GCCGCGTGGTTCCAGAACTTCTTTG
NONE
Os.27383.2.S1_at--537--9231Chr03:27712224..27712248 (25 bp)
TCCATGATACTGGAGCGTGCTCCAT
LOC_Os03g48710
Os.27383.2.S1_at--197--6491Chr03:27712219..27712243 (25 bp)
GATACTGGAGCGTGCTCCATGATTC
LOC_Os03g48710
Os.27383.2.S1_at--295--9931Chr03:27712217..27712241 (25 bp)
TACTGGAGCGTGCTCCATGATTCAA
LOC_Os03g48710
Os.27383.2.S1_at--459--3911Chr03:27712215..27712239 (25 bp)
CTGGAGCGTGCTCCATGATTCAAAT
LOC_Os03g48710
Os.27383.2.S1_at--183--8091Chr03:27712213..27712237 (25 bp)
GGAGCGTGCTCCATGATTCAAATGC
LOC_Os03g48710
Os.27383.2.S1_at--247--5891Chr03:27712212..27712236 (25 bp)
GAGCGTGCTCCATGATTCAAATGCA
LOC_Os03g48710
Os.27383.2.S1_at--875--1631Chr03:27712211..27712235 (25 bp)
AGCGTGCTCCATGATTCAAATGCAA
LOC_Os03g48710
Os.27383.2.S1_at--1102--4651Chr03:27712210..27712234 (25 bp)
GCGTGCTCCATGATTCAAATGCAAT
LOC_Os03g48710
Os.27383.2.S1_at--883--7312Chr06:26380156..26380218 (25 bp)
GTGCTCCATGATTCAAATGCAATTA
NONE
Os.27383.2.S1_at--405--8831Chr03:27712200..27712224 (25 bp)
TGATTCAAATGCAATTACACCTGTT
LOC_Os03g48710
Target Sequence 
GCCGCGTGGTTCCAGAACTTCTTTGCCCAGTTTTAGGGGATGGAGAAGGGATTTGGTCTTGTGACAGTGTTACATGAGCT
TCGGGCCTTCCACGAGTGTAGTGATTGCCAGCATCCAACTACAGAAGAATANNNNNNGGTNNNNNNNTNTCTNNANNNNN
TNTATNNTNTNNNANNNNCANNTNNNCNNNNNCNNGAGANACACATGATCTTGTGGAGATTTATTGGTCATTTTGATCCA
TGATACTGGAGCGTGCTCCATGATTCAAATGCAATTACACCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27383.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis