Browse Element(s) Details


Os.11757.1.S1_at

Description gb:CR288941
DB_XREF= gi:44675507
DB_XREF=CR288941
CLONE=p512d12p3
TID=Os.11757.1
CNT=12
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.11757 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_172512.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein
LOC_Os03g48642OsAffx.31174.5.S1_x_at6/113+27679746..27681044hypothetical protein
LOC_Os03g48642OsAffx.31174.4.S1_x_at4/113+27679746..27681044hypothetical protein
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48710Os.27383.2.S1_at10/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27383.2.S1_x_at9/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27235.2.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48710Os.30055.1.S1_x_at1/113+27712196..27716159expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11757.1.S1_at--887--4951Chr03:27686130..27686154 (25 bp)
GCATAGGTTTAGCTACATCTCAAGG
LOC_Os03g48660
Os.11757.1.S1_at--63--4991Chr03:27686068..27686092 (25 bp)
GCATGCTAGATGTTGGTCTAACCAT
LOC_Os03g48660
Os.11757.1.S1_at--732--6152Chr10:12973171..12973200 (23 bp)
GAGGTAGCCAAATTAGCCCCTGTGT
NONE
Os.11757.1.S1_at--916--131Chr03:27685796..27685820 (25 bp)
ATTAGCCCCTGTGTAGAAGCACCAT
LOC_Os03g48660
Os.11757.1.S1_at--502--5391Chr03:27685781..27685805 (25 bp)
GAAGCACCATCATCTGAGCACGTGG
LOC_Os03g48660
Os.11757.1.S1_at--397--8231Chr03:27685730..27685754 (25 bp)
GGCAATGGCACATGTAGATCTGTAT
LOC_Os03g48660
Os.11757.1.S1_at--274--4471Chr03:27685684..27685708 (25 bp)
GCCTCTGCTGTTGCTAATCATGATT
LOC_Os03g48660
Os.11757.1.S1_at--384--7751Chr03:27685611..27685635 (25 bp)
GGTGTACTTCGAACTTGTGCAGGAT
LOC_Os03g48660
Os.11757.1.S1_at--719--10111Chr03:27685585..27685609 (25 bp)
TATGGTGAATATCCGCTGCTTCATT
LOC_Os03g48660
Os.11757.1.S1_at--1078--3091Chr03:27685542..27685566 (25 bp)
AATATGAACCTGGAAGCACTGTACC
LOC_Os03g48660
Os.11757.1.S1_at--1047--5091Chr03:27685527..27685551 (25 bp)
GCACTGTACCACCTCACATGAAAAG
LOC_Os03g48660
Target Sequence 
GCATAGGTTTAGCTACATCTCAAGGAAAGGTTTCGAAACATTTTTGGACAGGCTAAAAATATGCATGCTAGATGTTGGTC
TAACCATTCAGGGAAATAAANCTGAAGAATTGCCTGAGCAGATTTTATGCTGTGTTAGGTTGAATGGGATAGATTACACA
CAATATAAGCCACTGATGACACATGGGGCCTNAACATGAAGCTTACTAGAACATGCTAACCAAAATTTGGTTATTGAGAG
GTAGCCAAATTAGCCCCTGTGTAGAAGCACCATCATCTGAGCACGTGGAATTGCACACAAGTAACATGGACAGAGGCAAT
GGCACATGTAGATCTGTATATCATTGCATGAGTTCCAGTGGCCTCTGCTGTTGCTAATCATGATTCTAGATTTTAGTAAA
TATCACTAATTTTCCTGTGAAAGAGTAGGTTTAGGTGTACTTCGAACTTGTGCAGGATTTATGGTGAATATCCGCTGCTT
CATTNATACATCAGTAGGGTAGAATATGAACCTGGAAGCACTGTACCACCTCACATGAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis