Browse Element(s) Details


OsAffx.3554.1.S1_s_at

Description tigr:9631.m04732
TID=OsAffx.3554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4862611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein
LOC_Os03g48642OsAffx.31174.5.S1_x_at6/113+27679746..27681044hypothetical protein
LOC_Os03g48642OsAffx.31174.4.S1_x_at4/113+27679746..27681044hypothetical protein
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3554.1.S1_s_at--501--6971Chr03:27675263..27675287 (25 bp)
GTAGCCTCCTACAGCTTCGACGAGG
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--159--7651Chr03:27675232..27675256 (25 bp)
GGGAGTTCGAGATCCACCTGGCGGG
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--729--9311Chr03:27675185..27675209 (25 bp)
TCCCACCTCGTCTACTACGAGAGGA
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--175--7151Chr03:27675176..27675200 (25 bp)
GTCTACTACGAGAGGAGCGTCCGCG
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--110--9911Chr03:27675173..27675197 (25 bp)
TACTACGAGAGGAGCGTCCGCGGCC
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--1126--1431Chr03:27675103..27675127 (25 bp)
AGAAGCTCTTCCTCTGGGTCTCCGT
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--96--8631Chr03:27675089..27675113 (25 bp)
TGGGTCTCCGTCACCGGGATCGTCG
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--370--7971Chr03:27675073..27675097 (25 bp)
GGATCGTCGCGCACCCGGACCAGGG
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--1162--5051Chr03:27675049..27675073 (25 bp)
GCACCGTCGAGTTCCAGGTCGGCTT
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--785--6671Chr03:27675039..27675063 (25 bp)
GTTCCAGGTCGGCTTCGTCTCCGAG
LOC_Os03g48626
OsAffx.3554.1.S1_s_at--406--1551Chr03:27674932..27674956 (25 bp)
AGCTTGGCCTGCTCCCCGTGGCTGA
LOC_Os03g48626
Target Sequence 
GTAGCCTCCTACAGCTTCGACGAGGCCACGGGGGAGTTCGAGATCCACCTGGCGGGGACCTGCTACGTCTGGTTCGGCTC
CCACCTCGTCTACTACGAGAGGAGCGTCCGCGGCCGCCTCTCGTACGGCGCCATCTCCGACCTCTCCGGCATCCAGGCCA
AGAAGCTCTTCCTCTGGGTCTCCGTCACCGGGATCGTCGCGCACCCGGACCAGGGCACCGTCGAGTTCCAGGTCGGCTTC
GTCTCCGAGGCGCTCCCGGCGTCGCAGTTCGACGCGGTGCCCGCCTGCGGCGCCGGCGCGCAGCTCCGCGGCGCTGCCGG
GGTTATCCGGGAGCTTGGCCTGCTCCCCGTGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3554.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis