Browse Element(s) Details


Os.48278.2.S1_x_at

Description gb:AK101780.1
DB_XREF= gi:32986989
TID=Os.48278.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033064P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033064P17, full insert sequence.
FL= gb:AK101780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4860010/11auxin-regulated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein
LOC_Os03g48642OsAffx.31174.5.S1_x_at6/113+27679746..27681044hypothetical protein
LOC_Os03g48642OsAffx.31174.4.S1_x_at4/113+27679746..27681044hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48278.2.S1_x_at--646--1971Chr03:27655167..27655191 (25 bp)
ACTGCAGCCTTGCTTCATCAGGAGA
LOC_Os03g48600
Os.48278.2.S1_x_at--1000--6151Chr03:27655133..27655157 (25 bp)
GAGGTTCATTGACGCCACAGGAGCA
LOC_Os03g48600
Os.48278.2.S1_x_at--833--1771Chr03:27655109..27655133 (25 bp)
ACCGGGCAGCAGGATAGACTCTTTC
LOC_Os03g48600
Os.48278.2.S1_x_at--542--1211Chr03:27655051..27655075 (25 bp)
AGTTAAGTGCTAGTGGCCTCTCTTA
LOC_Os03g48600
Os.48278.2.S1_x_at--977--2531Chr03:27655022..27655041 (20 bp)
AACTCTTTGTCATTGCTGGGCTGTC
LOC_Os03g48600
Os.48278.2.S1_x_at--492--8831Chr03:27654850..27654874 (25 bp)
TGATTCAGTACACGGTGCCCTGCAA
LOC_Os03g48600
Os.48278.2.S1_x_at--836--8991Chr03:27654813..27654837 (25 bp)
TGAAGGCTGAGCTTGCACCCATGAT
LOC_Os03g48600
Os.48278.2.S1_x_at--222--671Chr03:27654730..27654754 (25 bp)
ATGAAATGCCTCTCGTTTCTTTCTT
LOC_Os03g48600
Os.48278.2.S1_x_at--128--3731Chr03:27654642..27654666 (25 bp)
CTCTTCTTCCTATCTTTACGTTATT
LOC_Os03g48600
Os.48278.2.S1_x_at--505--2271Chr03:27654613..27654637 (25 bp)
AAATCTCTTCTCCTTATCATCTGTA
LOC_Os03g48600
Os.48278.2.S1_x_at--983--8751NONE
TGTATCTTGCTTCTGTCCTTAAATC
NONE
Target Sequence 
ACTGCAGCCTTGCTTCATCAGGAGACGGCAGCAAGAGGTTCATTGACGCCACAGGAGCACCGGGCAGCAGGATAGACTCT
TTCAGGAAGGAGGAGAAGCTCGTCAAGATCGAAGAAAGTTAAGTGCTAGTGGCCTCTCTTAACCCTCCCCAACTCTTTGT
CATTGCTGGGCTGTCGTCAGGAGCTCGAGTCGTGATTCAGTACACGGTGCCCTGCAATGGCGACAGCGATGAAGGCTGAG
CTTGCACCCATGATCAGCGTTGAGTTATTCATATAGGCTCTGTTGATAGAGAGAGATCAAGTTACTGACGAAATGAAATG
CCTCTCGTTTCTTTCTTCAGATTGAGATGTTAAGTTTGGAATTATTTTTCAAGCATTCAGTTAGCCTAGAGTATTCTTCT
CTCTTCTTCCTATCTTTACGTTATTATCAAAATCTCTTCTCCTTATCATCTGTAAGTGCCTTTAAATTAATTATAGAGTA
TAATGTATTGTTCGTTTTGTATCTTGCTTCTGTCCTTAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48278.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis