Browse Element(s) Details


OsAffx.13409.1.S1_at

Description tigr:9631.m04727
TID=OsAffx.13409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4857011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48550OsAffx.30226.3.S1_at11/113+27623825..27624707hypothetical protein
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13409.1.S1_at--758--951Chr03:27641081..27641105 (25 bp)
AGGACTGGGCCGGTTCATCTTGCCG
LOC_Os03g48570
OsAffx.13409.1.S1_at--444--8311Chr03:27641113..27641137 (25 bp)
GGCTAGTAGCAGTAGTGCTCCTGGC
LOC_Os03g48570
OsAffx.13409.1.S1_at--211--1171Chr03:27641117..27641141 (25 bp)
AGTAGCAGTAGTGCTCCTGGCCCGG
LOC_Os03g48570
OsAffx.13409.1.S1_at--704--5851Chr03:27641218..27641242 (25 bp)
GACCACGGCAACGTTTGCGGCTGAT
LOC_Os03g48570
OsAffx.13409.1.S1_at--101--2591Chr03:27641227..27641251 (25 bp)
AACGTTTGCGGCTGATCCGTACAAG
LOC_Os03g48570
OsAffx.13409.1.S1_at--837--4691Chr03:27641234..27641258 (25 bp)
GCGGCTGATCCGTACAAGGATAGCA
LOC_Os03g48570
OsAffx.13409.1.S1_at--297--5291Chr03:27641272..27641296 (25 bp)
GAATGGGCCCGACCCGATTCACAAT
LOC_Os03g48570
OsAffx.13409.1.S1_at--417--4531Chr03:27641278..27641300 (23 bp)
GCCCGACCCGATTCACAATAGGTTT
LOC_Os03g48570
OsAffx.13409.1.S1_at--1162--7031Chr03:27642211..27642235 (25 bp)
GTAAAAGAGGATGCAGATCTCTGAA
LOC_Os03g48570
OsAffx.13409.1.S1_at--336--8991Chr03:27642254..27642278 (25 bp)
TGAATGGAAGGTTTCATGCCAGGTA
LOC_Os03g48570
OsAffx.13409.1.S1_at--600--7871Chr03:27642263..27642287 (25 bp)
GGTTTCATGCCAGGTAGATGATGAT
LOC_Os03g48570
Target Sequence 
AGGACTGGGCCGGTTCATCTTGCCGGTGGCACGGCTAGTAGCAGTAGTGCTCCTGGCCCGGCCGTCGCCACGCCGCGAGG
TGATGCCGCCGGAGCTACGACGATGACGGCGACGACGACGACAATGACGGCGGCGGCGACCACGGCAACGTTTGCGGCTG
ATCCGTACAAGGATAGCAAGAGGAAGGTGCCGAATGGGCCCGACCCGATTCACAATAGGTTTTGTAAAAGAGGATGCAGA
TCTCTGAAGAAAACAAGATTTGGTGTTGAATGGAAGGTTTCATGCCAGGTAGATGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis