Browse Element(s) Details


Os.17998.1.S1_at

Description gb:AK073577.1
DB_XREF= gi:32983600
TID=Os.17998.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047C15, full insert sequence.
FL= gb:AK073577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4854010/11HIPL1 protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48480Os.21138.1.S1_at10/113+27593817..27596684thioesterase family protein, putative, expressed
LOC_Os03g48490OsAffx.3553.1.S1_x_at11/113+27601413..27608908bHLH family protein, putative, expressed
LOC_Os03g48504NANA3+27609659..27609847NA
LOC_Os03g48520OsAffx.3553.2.A1_at11/113+27611598..27612350PB1 domain containing protein
LOC_Os03g48529NANA3+27612932..27613077NA
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48550OsAffx.30226.3.S1_at11/113+27623825..27624707hypothetical protein
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17998.1.S1_at--430--8671Chr03:27623381..27623405 (25 bp)
TGTGCTTAGTTCTCAAGTGGTGGGC
LOC_Os03g48540
Os.17998.1.S1_at--986--10571Chr03:27623390..27623414 (25 bp)
TTCTCAAGTGGTGGGCTTGTGCAAT
LOC_Os03g48540
Os.17998.1.S1_at--89--3211Chr03:27623411..27623435 (25 bp)
CAATGTAGCATTGTGATGACTGAAA
LOC_Os03g48540
Os.17998.1.S1_at--333--4251Chr03:27623445..27623469 (25 bp)
CCGTGCTTGCCTTTAGGATTGGGCA
LOC_Os03g48540
Os.17998.1.S1_at--451--4451Chr03:27623453..27623477 (25 bp)
GCCTTTAGGATTGGGCAATGGGCAA
LOC_Os03g48540
Os.17998.1.S1_at--93--8231Chr03:27623466..27623490 (25 bp)
GGCAATGGGCAAGAATATTTGGCAA
LOC_Os03g48540
Os.17998.1.S1_at--886--8471Chr03:27623485..27623509 (25 bp)
TGGCAAGTGGAACCACGTTACTGTT
LOC_Os03g48540
Os.17998.1.S1_at--585--4931Chr03:27623563..27623587 (25 bp)
GCTTGTTTGGTTTGGTGCTAAATTA
LOC_Os03g48540
Os.17998.1.S1_at--382--8571Chr03:27623575..27623599 (25 bp)
TGGTGCTAAATTATGCCCAACTAAT
LOC_Os03g48540
Os.17998.1.S1_at--682--3131Chr03:27623583..27623607 (25 bp)
AATTATGCCCAACTAATTCATTGGT
LOC_Os03g48540
Os.17998.1.S1_at--116--5371NONE
GAAGACAAAAATAAACTCCCCATGG
NONE
Target Sequence 
TGTGCTTAGTTCTCAAGTGGTGGGCTTGTGCAATGTAGCATTGTGATGACTGAAAATTAATTANCCGTGCTTGCCTTTAG
GATTGGGCAATGGGCAAGAATATTTGGCAAGTGGAACCACGTTACTGTTNTAAATGAAAGTNGTACGGGGGGTAAGCTTT
GTTNTGAACCTTTAGTTTTCGGGCTTGTTTGGTTTGGTGCTAAATTATGCCCAACTAATTCATTGGTAATTTTGAATAGT
GCTTNTATATGTTTGGATTGGTGTCAAATTTTNCCAACNCCAGTTNTNNGGTAGTACAAAATTTGTCCANTTAAATTTAG
TAGTGTCAAAAGTTATNTAAACTTTGGTACTNCCAAGATTTTAGTAGGGCNCCAAACCAAACTGGCCCTTCATNTTCTTT
TTGTTNGAAGAAGACAAAAATAAACTCCCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis