Browse Element(s) Details


OsAffx.13408.1.S1_at

Description tigr:9631.m04726
TID=OsAffx.13408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Core-2I-Branching enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4856010/11BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os06g203701/11microtubule-associated protein MAP65-1a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48490OsAffx.3553.1.S1_x_at11/113+27601413..27608908bHLH family protein, putative, expressed
LOC_Os03g48504NANA3+27609659..27609847NA
LOC_Os03g48520OsAffx.3553.2.A1_at11/113+27611598..27612350PB1 domain containing protein
LOC_Os03g48529NANA3+27612932..27613077NA
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48550OsAffx.30226.3.S1_at11/113+27623825..27624707hypothetical protein
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0000911biological_processcytokinesis by cell plate formation
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0016051biological_processcarbohydrate biosynthesis
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0009536cellular_componentplastid
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008017molecular_functionmicrotubule binding
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13408.1.S1_at--973--6171Chr03:27628657..27628681 (25 bp)
GAGGAGCTTGCCGACAGCATTCAAG
LOC_Os03g48560
OsAffx.13408.1.S1_at--343--3631Chr03:27628663..27628687 (25 bp)
CTTGCCGACAGCATTCAAGCTCTTC
LOC_Os03g48560
OsAffx.13408.1.S1_at--106--3771NONE
CTCTTCACTGGGTCAGCGTGGATGG
NONE
OsAffx.13408.1.S1_at--16--7511Chr03:27630260..27630284 (25 bp)
GTGGATGGTGCTATCGAGGCCGTTC
LOC_Os03g48560
OsAffx.13408.1.S1_at--341--891Chr03:27630276..27630300 (25 bp)
AGGCCGTTCGTGGAGTACCTGATCT
LOC_Os03g48560
OsAffx.13408.1.S1_at--373--4231Chr03:27630279..27630303 (25 bp)
CCGTTCGTGGAGTACCTGATCTGGG
LOC_Os03g48560
OsAffx.13408.1.S1_at--121--7771Chr03:27630416..27630440 (25 bp)
GGTGAACAGCGACCTCCACTTCATC
LOC_Os03g48560
OsAffx.13408.1.S1_at--904--1731Chr03:27630427..27630451 (25 bp)
ACCTCCACTTCATCTCCTGGGACAA
LOC_Os03g48560
OsAffx.13408.1.S1_at--1159--5111Chr03:27630649..27630673 (25 bp)
GCAACAGTACTACTACCGGCGGCGC
LOC_Os03g48560
OsAffx.13408.1.S1_at--980--2112Chr03:27630652..27630676 (25 bp)
ACAGTACTACTACCGGCGGCGCCGT
LOC_Os03g48560
OsAffx.13408.1.S1_at--732--9091Chr03:27630763..27630787 (25 bp)
TGCTGTCGGAGGAGAATTTCCGGCC
LOC_Os03g48560
Target Sequence 
GAGGAGCTTGCCGACAGCATTCAAGCTCTTCACTGGGTCAGCGTGGATGGTGCTATCGAGGCCGTTCGTGGAGTACCTGA
TCTGGGGGTGGGACAACCTCCCGCGGACGGTGCTCATGTACTACGCCAACTTCATCTCGTCGCCGGAGGGCTACTTCCAC
ACCGTCGCCTGCAACGCCGGCGAGTTCAGGAACACCACGGTGAACAGCGACCTCCACTTCATCTCCTGGGACAACCCGCC
CATGCAGCACCCGCACTACCTCGCCGACGCTGACTGGGGCCCCATGCTCGCCAGCGGCGCCCCCTTCGCCCGCAAGTTCC
GCCGCGACGACTCCGTTCTCGACCGCATCGACGCCGACCTCCTCTCCCGCCGCCCCGGCATGGTCGCCCCCGGCGCCTGG
TGCGGCGCCGCCGCCGCCGCCGATGGCGACAGCAACAGTACTACTACCGGCGGCGCCGTCGACCCCTGCGGCGTTGCCGG
CGGCGGCGGCGAGGCGGTGCGGCCGGGGCCTGGCGCCGAGCGGCTGCAGCGGCTGGTGGCGTCGCTGCTGTCGGAGGAGA
ATTTCCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis