Browse Element(s) Details


OsAffx.3553.1.S1_x_at

Description tigr:9631.m04720
TID=OsAffx.3553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=centromere protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4849011/11bHLH family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48480Os.21138.1.S1_at10/113+27593817..27596684thioesterase family protein, putative, expressed
LOC_Os03g48490OsAffx.3553.1.S1_x_at11/113+27601413..27608908bHLH family protein, putative, expressed
LOC_Os03g48504NANA3+27609659..27609847NA
LOC_Os03g48520OsAffx.3553.2.A1_at11/113+27611598..27612350PB1 domain containing protein
LOC_Os03g48529NANA3+27612932..27613077NA
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48550OsAffx.30226.3.S1_at11/113+27623825..27624707hypothetical protein
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3553.1.S1_x_at--168--2732Chr03:27608322..27608346 (25 bp)
AAGCACTGGTGCGAGTGGCTGCCAC
LOC_Os03g48490
OsAffx.3553.1.S1_x_at--295--7092Chr03:27608507..27608531 (25 bp)
GTCAACGGCGGTGGAGACGAACACC
LOC_Os03g48490
OsAffx.3553.1.S1_x_at--453--8552Chr03:27612032..27612056 (25 bp)
TGGAGACGAACACCCGGAAGCTCGC
NONE
OsAffx.3553.1.S1_x_at--428--4112Chr03:27612038..27612062 (25 bp)
CGAACACCCGGAAGCTCGCGGACGG
NONE
OsAffx.3553.1.S1_x_at--1142--4533Chr03:27612070..27612094 (25 bp)
GCCCTGAGGCGGTCGTACTCGTCGC
NONE
OsAffx.3553.1.S1_x_at--734--9414Chr04:27144579..27144603 (25 bp)
TCGTCGCGCATGTGGGCGAGCTCCT
NONE
OsAffx.3553.1.S1_x_at--309--1592Chr03:27612106..27612130 (25 bp)
AGCTCCTCGTCGGAGGTGACCGACA
NONE
OsAffx.3553.1.S1_x_at--784--6131Chr03:27608604..27608628 (25 bp)
GAGGTGACCGACACCAGGAGGTCCT
LOC_Os03g48490
OsAffx.3553.1.S1_x_at--728--5611Chr03:27608613..27608637 (25 bp)
GACACCAGGAGGTCCTCGTCGGGAC
LOC_Os03g48490
OsAffx.3553.1.S1_x_at--527--4193Chr03:27608637..27608661 (25 bp)
CCCTCGTCGGCGAGGCGGTACCTGA
LOC_Os03g48490
OsAffx.3553.1.S1_x_at--631--4531Chr03:27608852..27608876 (25 bp)
GCCGCCATCGGAACGATTCGATCGA
LOC_Os03g48490
Target Sequence 
AAGCACTGGTGCGAGTGGCTGCCACCGGCGGCGAGCTCCTGCGCGCTGCGCGCTCGCCGCATGGGCGGCGGCGCGGCGGG
GAGCCCGGCGGCGAGCCCCATCTCGCTCCGGGCGCGCCGCATCATCATCGGGGGCGCCGCGACGGGTGGGTGTGGGCGGC
GCCGCTGCTGGACGCCGGCGGCGGCGTCAACGGCGGTGGAGACGAACACCCGGAAGCTCGCGGACGGCCGCGTCGCCCTG
AGGCGGTCGTACTCGTCGCGCATGTGGGCGAGCTCCTCGTCGGAGGTGACCGACACCAGGAGGTCCTCGTCGGGACCCTC
GTCGGCGAGGCGGTACCTGACCGCCGTGACGGCGGCGGCGCCGGCCTTCTCCGCCAGCCGCGCCGTCAGCTCGCGGAAGG
GACACCGCGCGGCACGGCGAGGGCGCGCGTCTCGCCGCCGACGTACCGGAGGCCGCCGCCGGGGCCGCACGGAACGAGGC
GGCCACCGTGGCTGCAGAGCAGCCTCATCATCGCCTCCTCCTCCTTCGCCGCCGCCATCGGAACGATTCGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3553.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis