Browse Element(s) Details

Os.5235.1.S1_x_at

Description

gb:AU174191
DB_XREF= gi:13165394
DB_XREF=AU174191
CLONE=S1070
TID=Os.5235.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5235 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g48540	3/11	HIPL1 protein precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g48480	Os.21138.1.S1_at	10/11	3	+	27593817..27596684	thioesterase family protein, putative, expressed
LOC_Os03g48490	OsAffx.3553.1.S1_x_at	11/11	3	+	27601413..27608908	bHLH family protein, putative, expressed
LOC_Os03g48504	NA	NA	3	+	27609659..27609847	NA
LOC_Os03g48520	OsAffx.3553.2.A1_at	11/11	3	+	27611598..27612350	PB1 domain containing protein
LOC_Os03g48529	NA	NA	3	+	27612932..27613077	NA
LOC_Os03g48540	Os.17998.1.S1_at	10/11	3	+	27618190..27623821	HIPL1 protein precursor, putative, expressed
LOC_Os03g48540	Os.5235.1.S1_x_at	3/11	3	+	27618190..27623821	HIPL1 protein precursor, putative, expressed
LOC_Os03g48550	OsAffx.30226.3.S1_at	11/11	3	+	27623825..27624707	hypothetical protein
LOC_Os03g48560	OsAffx.13408.1.S1_at	10/11	3	+	27627635..27630911	BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560	OsAffx.13408.1.S1_x_at	10/11	3	+	27627635..27630911	BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560	Os.46676.1.A1_x_at	1/11	3	+	27627635..27630911	BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570	OsAffx.13409.1.S1_at	11/11	3	+	27640988..27642323	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0031225	cellular_component	anchored to membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5235.1.S1_x_at--332--533	1	NONE	GAAGTTGGCCAGTAGTAATGGCGTT	NONE
Os.5235.1.S1_x_at--270--843	1	Chr03:27623222..27623243 (22 bp)	GGCCAGTAGTAATGGCGTTTGTTTT	LOC_Os03g48540
Os.5235.1.S1_x_at--798--1035	1	NONE	TTTTTGAGATGTCCCATCCCTGTTA	NONE
Os.5235.1.S1_x_at--889--931	1	Chr03:27623268..27623290 (23 bp)	TCCCATCCCTGTTAGCTTGTTATAT	LOC_Os03g48540
Os.5235.1.S1_x_at--281--419	1	Chr03:27623272..27623296 (25 bp)	CCCTGTTAGCTTGTTATATATCATG	LOC_Os03g48540
Os.5235.1.S1_x_at--786--5	1	NONE	ATTGACCGAGCCCTACACCGTCTGT	NONE
Os.5235.1.S1_x_at--1060--865	1	NONE	TGTGCTTAGTTTCTCCAAAGTGGTG	NONE
Os.5235.1.S1_x_at--578--731	1	NONE	GTGCTTAGTTTCTCCAAAGTGGTGG	NONE
Os.5235.1.S1_x_at--271--907	1	NONE	TGCTTAGTTTCTCCAAAGTGGTGGG	NONE
Os.5235.1.S1_x_at--595--1069	1	NONE	TTGAAAAATTAATTAAGCCCGTGCT	NONE
Os.5235.1.S1_x_at--1074--895	1	NONE	TGAAAAATTAATTAAGCCCGTGCTT	NONE

Target Sequence

GAAGTTGGCCAGTAGTAATGGCGTTTGTTTTGTGTGCCATTATTNTTTTTGAGATGTCCCATCCCTGTTAGCTTGTTATA
TATCATGTATGGNTTCTTTNCGCACCCTGCTGTACAGCATTGACCGAGCCCTACACCGTCTGTGTGACTGTTTGTGATTA
TTAGTAGTATTTGGNTGTGCTTAGTTTCTCCAAAGTGGTGGGNCTTGTGCCAANTGTAAGCCATTGTNGATGGACTTGAA
AAATTAATTAAGCCCGTGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis