Browse Element(s) Details


Os.21138.1.S1_at

Description gb:AK071319.1
DB_XREF= gi:32981342
TID=Os.21138.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084L19, full insert sequence.
FL= gb:AK071319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4848010/11thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48480Os.21138.1.S1_at10/113+27593817..27596684thioesterase family protein, putative, expressed
LOC_Os03g48490OsAffx.3553.1.S1_x_at11/113+27601413..27608908bHLH family protein, putative, expressed
LOC_Os03g48504NANA3+27609659..27609847NA
LOC_Os03g48520OsAffx.3553.2.A1_at11/113+27611598..27612350PB1 domain containing protein
LOC_Os03g48529NANA3+27612932..27613077NA
LOC_Os03g48540Os.17998.1.S1_at10/113+27618190..27623821HIPL1 protein precursor, putative, expressed
LOC_Os03g48540Os.5235.1.S1_x_at3/113+27618190..27623821HIPL1 protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21138.1.S1_at--362--3771NONE
CTCCACCCAGGTGTGGGCGGTGAAG
NONE
Os.21138.1.S1_at--893--10571Chr03:27594102..27594126 (25 bp)
TTCTCTGCAATCTGCCGGTGCCGGA
LOC_Os03g48480
Os.21138.1.S1_at--186--2311Chr03:27594013..27594037 (25 bp)
AAAGTACAAAGCTTCATTTCGATGC
LOC_Os03g48480
Os.21138.1.S1_at--1045--9851Chr03:27594009..27594033 (25 bp)
TACAAAGCTTCATTTCGATGCTGGA
LOC_Os03g48480
Os.21138.1.S1_at--57--9391Chr03:27593995..27594019 (25 bp)
TCGATGCTGGAAATGAAATGGTTTG
LOC_Os03g48480
Os.21138.1.S1_at--1067--5571Chr03:27593981..27594005 (25 bp)
GAAATGGTTTGATCTCACGATAATG
LOC_Os03g48480
Os.21138.1.S1_at--333--6851Chr03:27593975..27593999 (25 bp)
GTTTGATCTCACGATAATGTGACAT
LOC_Os03g48480
Os.21138.1.S1_at--507--7371Chr03:27593957..27593981 (25 bp)
GTGACATATTGTAAGTCTGTTGTAA
LOC_Os03g48480
Os.21138.1.S1_at--374--271Chr03:27593926..27593950 (25 bp)
ATATGTCAGAGGAGTCGAGGTGTTT
LOC_Os03g48480
Os.21138.1.S1_at--78--8151Chr03:27593895..27593919 (25 bp)
GGACAATTTTATTGTTCTTCATGAC
LOC_Os03g48480
Os.21138.1.S1_at--654--811Chr03:27593818..27593842 (25 bp)
ATGGTGAAGTATTTGGATTCCAAAC
LOC_Os03g48480
Target Sequence 
CTCCACCCAGGTGTGGGCGGTGAAGCTGTGGAAATTNGGATCCATCCACGAAGGAGAAGGGGGCTCAGATCTNCTGAATC
CAGGGTNGACTCTTCTCTGCAATCTGCCGGTGCCGGAGAGCGTGAAAAATGCAGGGGAGGCGCTCAAGANAATACTCTAA
ACTGTAAACATAATAATAATTAAAAGTACAAAGCTTCATTTCGATGCTGGAAATGAAATGGTTTGATCTCACGATAATGT
GACATATTGTAAGTCTGTTGTAATAATGTATATGTCAGAGGAGTCGAGGTGTTTGGTTTGGGACAATTTTATTGTTCTTC
ATGACCNAAATTTGGTCGTGCGCNAAAATTAAATGTGTNAAAAAAAAAAAGAAAGGGTGNAATGGTGAAGTATTTGGATT
CCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis