Browse Element(s) Details


OsAffx.13411.1.S1_at

Description tigr:9631.m04731
TID=OsAffx.13411.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Galactosyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4861011/11galactosyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein
LOC_Os03g48642OsAffx.31174.5.S1_x_at6/113+27679746..27681044hypothetical protein
LOC_Os03g48642OsAffx.31174.4.S1_x_at4/113+27679746..27681044hypothetical protein
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13411.1.S1_at--776--9551Chr03:27666476..27666500 (25 bp)
TCTTTCAGCAGGAAGCCATTTCACA
LOC_Os03g48610
OsAffx.13411.1.S1_at--768--9931Chr03:27666414..27666438 (25 bp)
TACGAAATTCATCTGGTGCCATGGC
LOC_Os03g48610
OsAffx.13411.1.S1_at--1144--7271Chr03:27666399..27666423 (25 bp)
GTGCCATGGCTCGATTTTTTGTTGC
LOC_Os03g48610
OsAffx.13411.1.S1_at--1087--10351Chr03:27666039..27666408 (25 bp)
TTTTTGTTGCCTTGACACGTGTCAT
LOC_Os03g48610
OsAffx.13411.1.S1_at--1052--3331Chr03:27666024..27666048 (25 bp)
CACGTGTCATTTCCGCCAAGTATAT
LOC_Os03g48610
OsAffx.13411.1.S1_at--669--7611Chr03:27665911..27665935 (25 bp)
GGGAACATTAACTACTACCATCGAC
LOC_Os03g48610
OsAffx.13411.1.S1_at--324--9891Chr03:27665899..27665923 (25 bp)
TACTACCATCGACCACTGAGAGAAG
LOC_Os03g48610
OsAffx.13411.1.S1_at--288--6131Chr03:27665260..27665284 (25 bp)
GAGTGGCCCAGAGAAGCGTACCCGC
LOC_Os03g48610
OsAffx.13411.1.S1_at--653--2971Chr03:27665227..27665251 (25 bp)
AATGGTCCTGGCTACATTGTTTCTT
LOC_Os03g48610
OsAffx.13411.1.S1_at--572--2071Chr03:27665199..27665223 (25 bp)
ACATTGCAAACTTCGTCGTGTCTGA
LOC_Os03g48610
OsAffx.13411.1.S1_at--832--1311Chr03:27664688..27664712 (25 bp)
AGATGGCCTGCCTTTGGGACAAGCT
LOC_Os03g48610
Target Sequence 
TCTTTCAGCAGGAAGCCATTTCACAGAGCGCATGGCTGTGAGGAGATCATGGATGTCTTCAGTACGAAATTCATCTGGTG
CCATGGCTCGATTTTTTGTTGCCTTGACACGTGTCATTTCCGCCAAGTATATCATGAAGTGCGATGATGATACATTTGTC
AGACTTGATTCAGTGATGGCTGACGTTAGGAAAATCCCATATGGTAAAAGCTTCTATCTTGGGAACATTAACTACTACCA
TCGACCACTGAGAGAAGGAAAATGGGCAGTCTCATTTGAGGAGTGGCCCAGAGAAGCGTACCCGCCCTATGCCAATGGTC
CTGGCTACATTGTTTCTTCTGACATTGCAAACTTCGTCGTGTCTGAAATGGAGAAGGGCAGACTAAATCTGTTCAAGATG
GAGGATGTGAGCATGGGCATGTGGGTGGGGCAGTTCGTCGACACGGTGAAGGCCGTGGACTATATCCACAGCCTCCGGTT
CTGCCAGTTCGGCTGCGTCGACGACTACCTCACCGCGCACTACCAGTCACCGGGGCAGATGGCCTGCCTTTGGGACAAGC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis