Browse Element(s) Details


Os.8439.1.S1_at

Description gb:AK058266.1
DB_XREF= gi:32968284
TID=Os.8439.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A07, full insert sequence.
FL= gb:AK058266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4862611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein
LOC_Os03g48642OsAffx.31174.5.S1_x_at6/113+27679746..27681044hypothetical protein
LOC_Os03g48642OsAffx.31174.4.S1_x_at4/113+27679746..27681044hypothetical protein
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8439.1.S1_at--554--1771Chr03:27677628..27677652 (25 bp)
ACCGTCGCCGAGGTATAGCTTATTA
LOC_Os03g48626
Os.8439.1.S1_at--877--1551Chr03:27677612..27677636 (25 bp)
AGCTTATTAGCTTGTGTGTATGAGT
LOC_Os03g48626
Os.8439.1.S1_at--488--7431Chr03:27677597..27677621 (25 bp)
GTGTATGAGTTGCTCCATGGCTTTC
LOC_Os03g48626
Os.8439.1.S1_at--1120--852Chr07:4989091..4989113 (22 bp)
ATGGCTTTCACTTTTCACATGGTGA
NONE
Os.8439.1.S1_at--1146--10511Chr03:27677575..27677599 (25 bp)
TTCACTTTTCACATGGTGACATACG
LOC_Os03g48626
Os.8439.1.S1_at--449--7371Chr03:27677560..27677584 (25 bp)
GTGACATACGCATGTGTGTGCCCAT
LOC_Os03g48626
Os.8439.1.S1_at--637--791Chr03:27677549..27677573 (25 bp)
ATGTGTGTGCCCATGCTTGGTTGCC
LOC_Os03g48626
Os.8439.1.S1_at--550--4931Chr03:27677535..27677559 (25 bp)
GCTTGGTTGCCCATGTCAATCATTT
LOC_Os03g48626
Os.8439.1.S1_at--1117--7072Chr02:16514232..16514251 (20 bp)
GTCAATCATTTATTTTCCAAGCGAG
NONE
Os.8439.1.S1_at--371--10351Chr03:27677513..27677537 (25 bp)
TTTATTTTCCAAGCGAGGTCCTCAT
LOC_Os03g48626
Os.8439.1.S1_at--680--6131Chr03:27677499..27677523 (25 bp)
GAGGTCCTCATTTCCGGCAATAAAA
LOC_Os03g48626
Target Sequence 
ACCGTCGCCGAGGTATAGCTTATTAGCTTGTGTGTATGAGTTGCTCCATGGCTTTCACTTTTCACATGGTGACATACGCA
TGTGTGTGCCCATGCTTGGTTGCCCATGTCAATCATTTATTTTCCAAGCGAGGTCCTCATTTCCGGCAATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis