Browse Element(s) Details


Os.11757.2.S1_at

Description gb:CB669886
DB_XREF= gi:29673611
DB_XREF=OSJNEe02L02.f
CLONE=OSJNEe02L02
TID=Os.11757.2
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11757 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_172512.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein
LOC_Os03g48642OsAffx.31174.5.S1_x_at6/113+27679746..27681044hypothetical protein
LOC_Os03g48642OsAffx.31174.4.S1_x_at4/113+27679746..27681044hypothetical protein
LOC_Os03g48660Os.11757.1.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48660Os.11757.2.S1_at11/113+27685471..27690362expressed protein
LOC_Os03g48674OsAffx.422.1.S1_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48674OsAffx.20387.1.S1_x_at1/113+27694599..27700315retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48690OsAffx.31069.1.S1_at3/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.31069.1.S1_x_at2/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48690OsAffx.17106.1.S1_x_at1/113+27701460..27704519retrotransposon protein, putative, unclassified
LOC_Os03g48710Os.27383.2.S1_at10/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27383.2.S1_x_at9/113+27712196..27716159expressed protein
LOC_Os03g48710Os.27235.2.S1_x_at1/113+27712196..27716159expressed protein
LOC_Os03g48710Os.30055.1.S1_x_at1/113+27712196..27716159expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11757.2.S1_at--725--3171Chr03:27689216..27689240 (25 bp)
AATTGTTTGCCTTGTATTGCCTCCG
LOC_Os03g48660
Os.11757.2.S1_at--962--71Chr03:27689201..27689225 (25 bp)
ATTGCCTCCGCTGTTGGTGTAAATG
LOC_Os03g48660
Os.11757.2.S1_at--755--2011Chr03:27689147..27689171 (25 bp)
ACTCATTCCATGAAGATGCCCTCCT
LOC_Os03g48660
Os.11757.2.S1_at--260--2311Chr03:27688657..27688681 (25 bp)
AAAGGCCTCTAGCAGGTTCTCAAGT
LOC_Os03g48660
Os.11757.2.S1_at--1066--5491Chr03:27688602..27688626 (25 bp)
GAACAGCTGGTCTCATATTGATCCT
LOC_Os03g48660
Os.11757.2.S1_at--1059--10211Chr03:27688587..27688611 (25 bp)
TATTGATCCTGGCACTTTCCGAGTC
LOC_Os03g48660
Os.11757.2.S1_at--314--9791Chr03:27688572..27688596 (25 bp)
TTTCCGAGTCCGTGGGTCAAACTAT
LOC_Os03g48660
Os.11757.2.S1_at--25--5931Chr03:27688402..27688426 (25 bp)
GAGCTTGCTCCAAATTATGCAGCGT
LOC_Os03g48660
Os.11757.2.S1_at--742--10131Chr03:27688387..27688411 (25 bp)
TATGCAGCGTACTACCCATTTGGAG
LOC_Os03g48660
Os.11757.2.S1_at--272--10131Chr03:27688328..27688352 (25 bp)
TATATCCCGATATGTTCAACTTCCC
LOC_Os03g48660
Os.11757.2.S1_at--307--2031Chr03:27687453..27687477 (25 bp)
ACTATATCCTGCCTCATTATTTCAA
LOC_Os03g48660
Target Sequence 
AATTGTTTGCCTTGTATTGCCTCCGCTGTTGGTGTAAATGAGAAGAAGAGACCACTTTCCACAAGCCCAACTCATTCCAT
GAAGATGCCCTCCTTNAAGCTCTCATTCAAGAANAAGTCTGGAGAAGCTCATCCTTCTTCCACACTATTGTCTACAAAGG
ATTTCCTTGAAAGGCCTCTAGCAGGTTCTCAAGTTCAGTTATGCTTACTGGAAAAGAAAATACTGAACAGCTGGTCTCAT
ATTGATCCTGGCACTTTCCGAGTCCGTGGGTCAAACTATTTTAGGGATAAAAAGAAAGAGCTTGCTCCAAATTATGCAGC
GTACTACCCATTTGGAGTTGATGTATACTTGTCACCNCAAAAACTCAACCATATATCCCGATATGTTCAACTTCCCNATG
TTCAAATCTCCAGTAAACTNCCACCACTTTTGGNGGTCAATNGTACAGGNTCCACTATATCCTGCCTCATTATTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11757.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis