Browse Element(s) Details


Os.12107.1.S1_a_at

Description gb:AK058487.1
DB_XREF= gi:32968505
TID=Os.12107.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D10, full insert sequence.
FL= gb:AK058487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3062410/11U6 snRNA-associated Sm-like protein LSm6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30590OsAffx.2810.1.S1_at11/112+18203314..18203817hypothetical protein
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein
LOC_Os02g30610Os.57172.1.S1_at11/112+18213398..18214905expressed protein
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os02g30630Os.1851.1.S1_at11/112+18230204..18232481Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os02g30640Os.25021.1.A1_at11/112+18233350..18235970expressed protein
LOC_Os02g30650Os.8967.1.S1_a_at11/112+18246701..18250149heavy metal-associated domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12107.1.S1_a_at--138--3731NONE
CTACCGCGGTATTTTGGCTTGTCTT
NONE
Os.12107.1.S1_a_at--408--3971Chr02:18226115..18226138 (24 bp)
CGGTATTTTGGCTTGTCTTGATGGT
LOC_Os02g30624
Os.12107.1.S1_a_at--110--7151Chr02:18226101..18226125 (25 bp)
GTCTTGATGGTTACATGAACATTGC
LOC_Os02g30624
Os.12107.1.S1_a_at--273--8591Chr02:18226049..18226073 (25 bp)
TGGTCAGCTGAAGAACAAGTACGGT
LOC_Os02g30624
Os.12107.1.S1_a_at--1122--2211Chr02:18226035..18226059 (25 bp)
ACAAGTACGGTGACGCTTTCATACG
LOC_Os02g30624
Os.12107.1.S1_a_at--715--9931Chr02:18226030..18226054 (25 bp)
TACGGTGACGCTTTCATACGAGGAA
LOC_Os02g30624
Os.12107.1.S1_a_at--706--7371Chr02:18226026..18226050 (25 bp)
GTGACGCTTTCATACGAGGAAACAA
LOC_Os02g30624
Os.12107.1.S1_a_at--16--3211Chr02:18225924..18225944 (21 bp)
CAATGTTTTATACATCAGCACATCA
LOC_Os02g30624
Os.12107.1.S1_a_at--139--391Chr02:18225911..18225935 (25 bp)
ATCAGCACATCAAAGCGTACCCTCA
LOC_Os02g30624
Os.12107.1.S1_a_at--847--6911Chr02:18225656..18225680 (25 bp)
GTATGTGGTGATTATTGGACCGTCA
LOC_Os02g30624
Os.12107.1.S1_a_at--541--10231Chr02:18225644..18225668 (25 bp)
TATTGGACCGTCAGGGATATGGATA
LOC_Os02g30624
Target Sequence 
CTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAANTATGTCAATGGTCAG
CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGA
TGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCT
AAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATT
TGTACCCNNNAAAAAAACTNATGTTCGATTTTAGTAGATTCTACANATTGTGGTCTGCTGCACTNTTGATGTATGTGGTG
ATTATTGGACCGTCAGGGATATGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12107.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis