Browse Element(s) Details


Os.5776.1.S1_at

Description gb:AK105187.1
DB_XREF= gi:32990396
TID=Os.5776.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F09, full insert sequence.
FL= gb:AK105187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3060011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30590OsAffx.2810.1.S1_at11/112+18203314..18203817hypothetical protein
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein
LOC_Os02g30610Os.57172.1.S1_at11/112+18213398..18214905expressed protein
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os02g30630Os.1851.1.S1_at11/112+18230204..18232481Acetolactate synthase III, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5776.1.S1_at--218--9871Chr02:18205862..18205886 (25 bp)
TACACCGGCTAGTCACCTAGTACTC
LOC_Os02g30600
Os.5776.1.S1_at--34--1771Chr02:18205865..18205889 (25 bp)
ACCGGCTAGTCACCTAGTACTCTTC
LOC_Os02g30600
Os.5776.1.S1_at--896--10051Chr02:18205871..18205895 (25 bp)
TAGTCACCTAGTACTCTTCTCCAAT
LOC_Os02g30600
Os.5776.1.S1_at--172--7111Chr02:18205873..18205897 (25 bp)
GTCACCTAGTACTCTTCTCCAATTT
LOC_Os02g30600
Os.5776.1.S1_at--12--3691Chr02:18205878..18205902 (25 bp)
CTAGTACTCTTCTCCAATTTCCATC
LOC_Os02g30600
Os.5776.1.S1_at--228--7011Chr02:18205881..18205905 (25 bp)
GTACTCTTCTCCAATTTCCATCCAT
LOC_Os02g30600
Os.5776.1.S1_at--359--3132Chr02:18205966..18205990 (25 bp)
AATTACTTAGTAATTTCTAGCTAGC
LOC_Os02g30600
Os.5776.1.S1_at--1006--10311Chr02:18205979..18206003 (25 bp)
TTTCTAGCTAGCTGCTCTGTAACAA
LOC_Os02g30600
Os.5776.1.S1_at--680--3711Chr02:18205982..18206006 (25 bp)
CTAGCTAGCTGCTCTGTAACAAGGG
LOC_Os02g30600
Os.5776.1.S1_at--66--4231Chr02:18206037..18206061 (25 bp)
CCGCTACTGAGTGCAGGAAACTGTA
LOC_Os02g30600
Os.5776.1.S1_at--571--5531Chr02:18206053..18206077 (25 bp)
GAAACTGTAAGTCGATTGAAGCTCT
LOC_Os02g30600
Target Sequence 
TACACCGGCTAGTCACCTAGTACTCTTCTCCAATTTCCATCCATCTCTCTCANTCCCTCCTCCCTTCAATTTNCACTTCN
TCTCTCTCCTACTCCTATGCATACTAATTACTTAGTAATTTCTAGCTAGCTGCTCTGTAACAAGGGAAATATTTACTGCA
ACTGTACTATGCTAGCCCGCTACTGAGTGCAGGAAACTGTAAGTCGATTGAAGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis