Browse Element(s) Details


OsAffx.24476.1.S1_at

Description tigr:9630.m02712
TID=OsAffx.24476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2848010/11retrotransposon, putative, centromere-specific
LOC_Os02g305701/11F-box protein interaction domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28440OsAffx.31892.2.S1_at1/112+16812806..16815993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28440OsAffx.17842.1.S1_at1/112+16812806..16815993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28450NANA2+16818750..16819199hypothetical protein
LOC_Os02g28460NANA2+16824375..16825339hypothetical protein
LOC_Os02g28470OsAffx.12252.2.S1_at11/112+16829185..16830259Transferase family protein, expressed
LOC_Os02g28470OsAffx.12252.2.S1_x_at11/112+16829185..16830259Transferase family protein, expressed
LOC_Os02g28480OsAffx.24476.1.S1_at10/112+16835419..16837857retrotransposon, putative, centromere-specific
LOC_Os02g28480OsAffx.25367.1.S1_at1/112+16835419..16837857retrotransposon, putative, centromere-specific
LOC_Os02g28480Os.54774.1.S1_x_at1/112+16835419..16837857retrotransposon, putative, centromere-specific
LOC_Os02g28490OsAffx.8888.1.S1_at1/112+16843093..16844485hypothetical protein
LOC_Os02g28500Os.52238.1.S1_at2/112+16848626..16854965retrotransposon, putative, centromere-specific
LOC_Os02g28510NANA2+16857097..16858879retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24476.1.S1_at--338--8811Chr02:16835777..16835801 (25 bp)
TGTTGGTGCCCTGGCCTTATGTTGG
LOC_Os02g28480
OsAffx.24476.1.S1_at--472--731Chr02:16835795..16835819 (25 bp)
ATGTTGGGCTCTGTCATTGTGTAGA
LOC_Os02g28480
OsAffx.24476.1.S1_at--410--8191Chr02:16836211..16836235 (25 bp)
GGAAGAATGTGTTACGTCTCCTGTA
LOC_Os02g28480
OsAffx.24476.1.S1_at--560--7811Chr02:16836220..16836244 (25 bp)
TGTTACGTCTCCTGTAATGGGCCTA
LOC_Os02g28480
OsAffx.24476.1.S1_at--537--9531Chr02:16836558..16836582 (25 bp)
TCTACACTGGCAAGATCTACAACAC
LOC_Os02g28480
OsAffx.24476.1.S1_at--520--9851NONE
TACAACACACGGAGAGGACCAGCCA
NONE
OsAffx.24476.1.S1_at--527--8099Chr04:16339621..16339999 (25 bp)
GGACCAGCCAAGGTACACAAACAAT
NONE
OsAffx.24476.1.S1_at--430--1291Chr02:16837703..16837727 (25 bp)
AGATCCACGTCTTGACTCCTGAAGA
LOC_Os02g28480
OsAffx.24476.1.S1_at--850--5715Chr11:12999108..12999127 (20 bp)
GACTCCTGAAGACTTGACTCTTGCA
NONE
OsAffx.24476.1.S1_at--371--2072Chr02:16837727..16837751 (25 bp)
ACTTGACTCTTGCAGCGAGGACACT
LOC_Os02g28480
OsAffx.24476.1.S1_at--535--6191Chr02:16837743..16837767 (25 bp)
GAGGACACTCCATTCGACAGGCATC
LOC_Os02g28480
Target Sequence 
TGTTGGTGCCCTGGCCTTATGTTGGGCTCTGTCATTGTGTAGAAATGATAGGGTTTTTGATAAATCACCATATGTTTCCT
ATATGCAGGAAGAATGTGTTACGTCTCCTGTAATGGGCCTATGGGCTTGTAACTTCGTCTGGGACCCTGGCCCTAGTGGG
GCCCATGTGGGGAATAAGGTTGATCTACACTGGCAAGATCTACAACACACGGAGAGGACCAGCCAAGGTACACAAACAAT
AATTGTTGACATACAGATCCACGTCTTGACTCCTGAAGACTTGACTCTTGCAGCGAGGACACTCCATTCGACAGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis