Browse Element(s) Details


OsAffx.12252.2.S1_x_at

Description tigr:9630.m02711
TID=OsAffx.12252.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2847011/11Transferase family protein, expressed
LOC_Os02g283402/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28420OsAffx.9930.1.S1_at4/112+16801967..16804441transposon protein, putative, Pong sub-class
LOC_Os02g28430OsAffx.2777.1.S1_at11/112+16805471..16805842hypothetical protein
LOC_Os02g28440OsAffx.31892.2.S1_at1/112+16812806..16815993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28440OsAffx.17842.1.S1_at1/112+16812806..16815993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28450NANA2+16818750..16819199hypothetical protein
LOC_Os02g28460NANA2+16824375..16825339hypothetical protein
LOC_Os02g28470OsAffx.12252.2.S1_at11/112+16829185..16830259Transferase family protein, expressed
LOC_Os02g28470OsAffx.12252.2.S1_x_at11/112+16829185..16830259Transferase family protein, expressed
LOC_Os02g28480OsAffx.24476.1.S1_at10/112+16835419..16837857retrotransposon, putative, centromere-specific
LOC_Os02g28480OsAffx.25367.1.S1_at1/112+16835419..16837857retrotransposon, putative, centromere-specific
LOC_Os02g28480Os.54774.1.S1_x_at1/112+16835419..16837857retrotransposon, putative, centromere-specific
LOC_Os02g28490OsAffx.8888.1.S1_at1/112+16843093..16844485hypothetical protein
LOC_Os02g28500Os.52238.1.S1_at2/112+16848626..16854965retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12252.2.S1_x_at--218--1052Chr02:16829668..16829692 (25 bp)
AGGTGACCGTGCTGCCGCCCAAGCG
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--285--8191Chr02:16829794..16829818 (25 bp)
GGAAGCTCCCGGAGCTGCCCGTAAT
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--746--1571Chr02:16829797..16829821 (25 bp)
AGCTCCCGGAGCTGCCCGTAATCGA
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--841--8071Chr02:16829804..16829828 (25 bp)
GGAGCTGCCCGTAATCGACCGCACG
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--1031--4591Chr02:16829836..16829860 (25 bp)
GCGACGTACCGGACAGGCATGACGA
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--370--1891Chr02:16829839..16829863 (25 bp)
ACGTACCGGACAGGCATGACGAGTT
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--71--9971Chr02:16829842..16829866 (25 bp)
TACCGGACAGGCATGACGAGTTCGC
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--600--3951Chr02:16829845..16829869 (25 bp)
CGGACAGGCATGACGAGTTCGCCGC
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--1055--6691Chr02:16829861..16829885 (25 bp)
GTTCGCCGCACCCATGAGGAGCTCG
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--344--9331Chr02:16829931..16830014 (25 bp)
TCGCCATTGACGAGGCGGGACGACG
LOC_Os02g28470
OsAffx.12252.2.S1_x_at--999--1512Chr02:16830188..16830212 (25 bp)
AGCATGGACACGTTCCGGAGGTGCC
LOC_Os02g28470
Target Sequence 
AGGTGACCGTGCTGCCGCCCAAGCGCCGCGGCCTCGCTCTCGGCGTCATCGTCCACCACTCCGCCTGCGACGGGGTGGGC
TCGACGCACTTCCTCCACACCTGGGCCGCAGCCTGCGCCGGCGACCGGAAGCTCCCGGAGCTGCCCGTAATCGACCGCAC
GCTCATCCGCGACGTACCGGACAGGCATGACGAGTTCGCCGCACCCATGAGGAGCTCGCCGACGCCGCGGGCGGCGTCTT
CACGGCCTGCGCCGCGGTGGCCGTCGCCATTGACGAGGCGGGACGACGCGCCGTTCTCGGTGGCCGGGTCGACGAGGTTC
CGCGTGTACGACGTCGACTTCGGGTTCGGGAGGCCGGCGAAGGTGGAGATCGTGTCCGTGGCGAAGACCGGCGCGGTGTC
GGCGGCGGAGGACCGGTCCGGCGCCGGCGGCATCGAGGTGGGCATAGCTCTGCCGCCGGAGAGCATGGACACGTTCCGGA
GGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12252.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis