Browse Element(s) Details


OsAffx.2777.1.S1_at

Description tigr:9630.m02707
TID=OsAffx.2777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2843011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28400OsAffx.8319.1.S1_x_at3/112+16777308..16787072retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28400OsAffx.8319.1.S1_at1/112+16777308..16787072retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28410OsAffx.2776.1.S1_at11/112+16800071..16801453Transferase family protein
LOC_Os02g28420OsAffx.9930.1.S1_at4/112+16801967..16804441transposon protein, putative, Pong sub-class
LOC_Os02g28430OsAffx.2777.1.S1_at11/112+16805471..16805842hypothetical protein
LOC_Os02g28440OsAffx.31892.2.S1_at1/112+16812806..16815993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28440OsAffx.17842.1.S1_at1/112+16812806..16815993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28450NANA2+16818750..16819199hypothetical protein
LOC_Os02g28460NANA2+16824375..16825339hypothetical protein
LOC_Os02g28470OsAffx.12252.2.S1_at11/112+16829185..16830259Transferase family protein, expressed
LOC_Os02g28470OsAffx.12252.2.S1_x_at11/112+16829185..16830259Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2777.1.S1_at--8--1891Chr02:16805787..16805811 (25 bp)
ACGATGACAATGACGGTGCTTGGAC
LOC_Os02g28430
OsAffx.2777.1.S1_at--1162--5591Chr02:16805782..16805806 (25 bp)
GACAATGACGGTGCTTGGACAATAG
LOC_Os02g28430
OsAffx.2777.1.S1_at--327--671Chr02:16805778..16805802 (25 bp)
ATGACGGTGCTTGGACAATAGCAAT
LOC_Os02g28430
OsAffx.2777.1.S1_at--809--5591Chr02:16805765..16805789 (25 bp)
GACAATAGCAATGGGATTCGCTTCC
LOC_Os02g28430
OsAffx.2777.1.S1_at--985--8631Chr02:16805754..16805778 (25 bp)
TGGGATTCGCTTCCTGCTGGCCTCG
LOC_Os02g28430
OsAffx.2777.1.S1_at--429--10671Chr02:16805744..16805768 (25 bp)
TTCCTGCTGGCCTCGGGTGCATGGA
LOC_Os02g28430
OsAffx.2777.1.S1_at--292--7771Chr02:16805729..16805753 (25 bp)
GGTGCATGGATCTGCCGTTGGCCAT
LOC_Os02g28430
OsAffx.2777.1.S1_at--664--831Chr02:16805724..16805748 (25 bp)
ATGGATCTGCCGTTGGCCATCCTCG
LOC_Os02g28430
OsAffx.2777.1.S1_at--773--3791Chr02:16805718..16805742 (25 bp)
CTGCCGTTGGCCATCCTCGGGAGCG
LOC_Os02g28430
OsAffx.2777.1.S1_at--36--5891Chr02:16805698..16805722 (25 bp)
GAGCGCGGATCTGCCGTCGGCTGTC
LOC_Os02g28430
OsAffx.2777.1.S1_at--51--9271Chr02:16805675..16805699 (25 bp)
TCCTCGGGCGCTTGGATACGCCGGT
LOC_Os02g28430
Target Sequence 
ACGATGACAATGACGGTGCTTGGACAATAGCAATGGGATTCGCTTCCTGCTGGCCTCGGGTGCATGGATCTGCCGTTGGC
CATCCTCGGGAGCGCGGATCTGCCGTCGGCTGTCCTCGGGCGCTTGGATACGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis