Browse Element(s) Details


OsAffx.8888.1.S1_at

Description gb:NM_193903.1
DB_XREF= gi:34914889
GEN=B1096D03.7
TID=OsAffx.8888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.7 (B1096D03.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g267901/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g284901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26730NANA4+15588832..15593586Zinc knuckle family protein
LOC_Os04g26740NANA4+15595651..15596386retrotransposon protein, putative, unclassified
LOC_Os04g26750NANA4+15602156..15607660retrotransposon, putative, centromere-specific
LOC_Os04g26790Os.50361.1.S1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.23877.1.A1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.50361.2.S1_x_at7/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.53837.1.S1_at6/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.8888.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13985.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13986.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26800OsAffx.22946.1.S1_at5/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26800OsAffx.286.1.S1_at1/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26810OsAffx.3909.1.S1_at11/114+15635953..15636949hypothetical protein
LOC_Os04g26810OsAffx.16205.1.S1_at2/114+15635953..15636949hypothetical protein
LOC_Os04g26820NANA4+15637320..15638253hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8888.1.S1_at--603--571Chr01:16148807..16148831 (25 bp)
ATCCATAGATATCCCCTTATTCAAG
NONE
OsAffx.8888.1.S1_at--496--8571Chr01:16148852..16148876 (25 bp)
TGGATACGCGATTCGAGTAGTCCTT
NONE
OsAffx.8888.1.S1_at--858--9532Chr01:16148895..16148919 (25 bp)
TCTACTTGTCCTTACTTATCCGGAA
NONE
OsAffx.8888.1.S1_at--532--12923Chr12:12561260..12561758 (25 bp)
AGACTTGGTATATGGTGGGCCCCAC
NONE
OsAffx.8888.1.S1_at--956--4071Chr01:16148974..16148998 (25 bp)
CGAGCATAGTCGATCAATGGCGTAT
NONE
OsAffx.8888.1.S1_at--963--4392Chr04:7287866..7287887 (22 bp)
GCCAGCCCAAAACCTATTTACGATA
NONE
OsAffx.8888.1.S1_at--1016--171Chr01:16149056..16149139 (25 bp)
ATTTACGATAGGAGTCCCTCACGCG
NONE
OsAffx.8888.1.S1_at--108--6393Chr06:7241242..7241266 (25 bp)
GATCGCACGCTTGCATCTTGCGGCT
NONE
OsAffx.8888.1.S1_at--100--10831Chr01:16149227..16149251 (25 bp)
TTGTGGACGACAAGGGCGAAGCCCA
NONE
OsAffx.8888.1.S1_at--239--7791Chr01:16149283..16149307 (25 bp)
GGTGCCAGCACGCTAGAGTTTGCAT
NONE
OsAffx.8888.1.S1_at--212--5351Chr01:16149442..16149466 (25 bp)
GAAGATTGCTTTCCAATCACCTTCT
NONE
Target Sequence 
ATCCATAGATATCCCCTTATTCAAGTAGAACTAGGGAGACAAGTATGGATACGCGATTCGAGTAGTCCTTGTAGTTTCCA
AATAGAACTCTACTTGTCCTTACTTATCCGGAACTCCTATATACGAGGTATGATTCCGTATAAGACTTGGTATATGGTGG
GCCCCACCGAGCATAGTCGATCAATGGCGTATCCAAGGGGTGGTCCGGGTGGTCCCCGGACTACCCAAAAAATCGCCAGC
CCAAAACCTATTTACGATAGGAGTCCCTCACGCGTTTGTGTTGTTTCCTCTCCCTCACGCGATCGCACGCTTGCATCTTG
CGGCTGCCGGCTAGGGACCCTGGTGAATGGCGACGGCGGAGTTGTGGACGACAAGGGCGAAGCCCATGCATGCATGGTCG
CCGCGGCGGACGGCAAGGGTGCCAGCACGCTAGAGTTTGCATGCTGCAGATTAAATATGAAGGAAGATGGACATAGAGCA
AATAAGATGAAGATTGCTTTCCAATCACCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis