Browse Element(s) Details


Os.53837.1.S1_at

Description gb:AK100338.1
DB_XREF= gi:32985547
TID=Os.53837.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081G13, full insert sequence.
FL= gb:AK100338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2649011/11expressed protein
LOC_Os04g267906/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26440OsAffx.26162.1.S1_at11/114+15399403..15401505expressed protein
LOC_Os04g26450OsAffx.13984.1.S1_at10/114+15403895..15404301hypothetical protein
LOC_Os04g26450OsAffx.3908.1.S1_at1/114+15403895..15404301hypothetical protein
LOC_Os04g26460OsAffx.13985.1.S1_at11/114+15407653..15407973hypothetical protein
LOC_Os04g26470OsAffx.13986.1.S1_at11/114+15410744..15411147hypothetical protein
LOC_Os04g26480OsAffx.19542.3.S1_x_at4/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26480OsAffx.9949.1.S1_at1/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26490Os.53837.1.S1_at11/114+15418641..15423259expressed protein
LOC_Os04g26510NANA4+15435918..15436655hypothetical protein
LOC_Os04g26520NANA4+15443457..15443720hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53837.1.S1_at--79--2572Chr04:15625091..15625115 (25 bp)
AACTGTGTCAAGTGGTACATCTCTG
LOC_Os04g26790
Os.53837.1.S1_at--953--7411Chr04:15419085..15419109 (25 bp)
GTGTTCTTTTTAGGCGCAATGTTTC
LOC_Os04g26490
Os.53837.1.S1_at--1144--10852Chr04:15624962..15624986 (25 bp)
TTGGCTGTCTTCAACATGGACTGAA
LOC_Os04g26790
Os.53837.1.S1_at--395--8332Chr04:15624926..15624950 (25 bp)
GGCTGGAATCGCTAGAACCTTAAAC
LOC_Os04g26790
Os.53837.1.S1_at--179--10452Chr04:15624871..15624895 (25 bp)
TTAGTACATGATCTTGGCTCTCCAC
LOC_Os04g26790
Os.53837.1.S1_at--589--3371Chr04:15418909..15418933 (25 bp)
CACCAGTCCCTGTTGGATGTTGGGT
LOC_Os04g26490
Os.53837.1.S1_at--968--32Chr04:15624784..15624808 (25 bp)
ATTGTAGTGCACGTATGCCTTCTTA
LOC_Os04g26790
Os.53837.1.S1_at--815--1892Chr04:15624774..15624798 (25 bp)
ACGTATGCCTTCTTACATGTTGTAA
LOC_Os04g26790
Os.53837.1.S1_at--272--331Chr04:15418799..15418823 (25 bp)
ATACATGTCTTTCTGCGTGTAACCC
LOC_Os04g26490
Os.53837.1.S1_at--17--7391Chr04:15418783..15418807 (25 bp)
GTGTAACCCAGGCTCGTGATTCCAA
LOC_Os04g26490
Os.53837.1.S1_at--186--10551Chr04:15418730..15418754 (25 bp)
TTCTATTGTTGTTTCCACCAAACTA
LOC_Os04g26490
Target Sequence 
AACTGTGTCAAGTGGTACATCTCTGGTACAAACATTGTGAAAAAAAATTATGTGTTATTGTTCTTGAGTGTTCTTTTTAG
GCGCAATGTTTCAAAGTTTTGAATGCACAGAGCTATGTGAAAATTTATGTTGGCTGTCTTCAACATGGACTGAAGGGTGC
TGTTAGGCTGGAATCGCTAGAACCTTAAACTATAATTTTAAAAAAAACCTATTTATATACTTTAGTACATGATCTTGGCT
CTCCACCAGTCCCTGTTGGATGTTGGGTTTATGACAAGTAGGGATATATGCATATAATATCAATTTGTATTGTAGTGCAC
GTATGCCTTCTTACATGTTGTAACCTTTTGAGAATACATGTCTTTCTGCGTGTAACCCAGGCTCGTGATTCCAACACAAA
GATCATAACCAACCTTGTTTGGTTCTATTGTTGTTTCCACCAAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis