Browse Element(s) Details


OsAffx.3908.1.S1_at

Description tigr:9632.m02518
TID=OsAffx.3908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g264501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26420NANA4+15378434..15380809transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26430NANA4+15382509..15385604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26440OsAffx.26162.1.S1_at11/114+15399403..15401505expressed protein
LOC_Os04g26450OsAffx.13984.1.S1_at10/114+15403895..15404301hypothetical protein
LOC_Os04g26450OsAffx.3908.1.S1_at1/114+15403895..15404301hypothetical protein
LOC_Os04g26460OsAffx.13985.1.S1_at11/114+15407653..15407973hypothetical protein
LOC_Os04g26470OsAffx.13986.1.S1_at11/114+15410744..15411147hypothetical protein
LOC_Os04g26480OsAffx.19542.3.S1_x_at4/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26480OsAffx.9949.1.S1_at1/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26490Os.53837.1.S1_at11/114+15418641..15423259expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3908.1.S1_at--828--2711Chr04:15617750..15617774 (25 bp)
AAGCATGGCTCAGGTGTTGCTCTCC
NONE
OsAffx.3908.1.S1_at--1014--2711Chr04:15617792..15617816 (25 bp)
AAGCATGGCTCAGGTAGCAGTACAG
NONE
OsAffx.3908.1.S1_at--54--6031Chr04:15617817..15617841 (25 bp)
GAGAGGAGTCTCTTGTTCCAAACAT
NONE
OsAffx.3908.1.S1_at--208--8591Chr04:15617857..15617881 (25 bp)
TGGTAGTGGTGTTCTGCGGTCAACA
NONE
OsAffx.3908.1.S1_at--709--4671Chr04:15617872..15617896 (25 bp)
GCGGTCAACAAGTCAGAGTTCCTGG
NONE
OsAffx.3908.1.S1_at--826--10611Chr04:15617899..15617923 (25 bp)
TTCGACAGCCAAGCAGGAACCACTA
NONE
OsAffx.3908.1.S1_at--686--5011Chr04:15617911..15617935 (25 bp)
GCAGGAACCACTATCGTTGTTAAAG
NONE
OsAffx.3908.1.S1_at--373--272Chr04:15617936..15617960 (25 bp)
ATATGTGAGCAGTTCCTCCATGGGC
NONE
OsAffx.3908.1.S1_at--697--8011Chr04:15617974..15617998 (25 bp)
GGAGGACATTCTATGGCTGGCTTCT
NONE
OsAffx.3908.1.S1_at--383--8351Chr04:15617988..15618012 (25 bp)
GGCTGGCTTCTTACCATATGATTGG
NONE
OsAffx.3908.1.S1_at--991--711Chr04:15618022..15618046 (25 bp)
ATGTTGGAACATACACTTCGAGGAA
NONE
Target Sequence 
AAGCATGGCTCAGGTGTTGCTCTCCACCTTCCAAACATCGACAAGCATGGCTCAGGTAGCAGTACAGGAGAGGAGTCTCT
TGTTCCAAACATGGATCAGAGCACCAGTGGTAGTGGTGTTCTGCGGTCAACAAGTCAGAGTTCCTGGACTTCGACAGCCA
AGCAGGAACCACTATCGTTGTTAAAGATATGTGAGCAGTTCCTCCATGGGCACAAGGTCATGGAGGAGGACATTCTATGG
CTGGCTTCTTACCATATGATTGGCAATGCTCAATGTTGGAACATACACTTCGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis