Browse Element(s) Details


OsAffx.13986.1.S1_at

Description tigr:9632.m02487
TID=OsAffx.13986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2647011/11hypothetical protein
LOC_Os04g267901/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26440OsAffx.26162.1.S1_at11/114+15399403..15401505expressed protein
LOC_Os04g26450OsAffx.13984.1.S1_at10/114+15403895..15404301hypothetical protein
LOC_Os04g26450OsAffx.3908.1.S1_at1/114+15403895..15404301hypothetical protein
LOC_Os04g26460OsAffx.13985.1.S1_at11/114+15407653..15407973hypothetical protein
LOC_Os04g26470OsAffx.13986.1.S1_at11/114+15410744..15411147hypothetical protein
LOC_Os04g26480OsAffx.19542.3.S1_x_at4/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26480OsAffx.9949.1.S1_at1/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26490Os.53837.1.S1_at11/114+15418641..15423259expressed protein
LOC_Os04g26510NANA4+15435918..15436655hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13986.1.S1_at--967--3632Chr04:15623207..15623350 (25 bp)
CTTCTTGAATATGAGAAAATACCTT
LOC_Os04g26790
OsAffx.13986.1.S1_at--915--4174Chr06:10213740..10213765 (25 bp)
CCTTTTCCGAACGCTAGTGCATTAA
NONE
OsAffx.13986.1.S1_at--429--4874Chr06:10265053..10265073 (21 bp)
GCTAGTGCATTAATCCCCGTCGTAG
NONE
OsAffx.13986.1.S1_at--433--3694Chr06:10265054..10265073 (20 bp)
CTAGTGCATTAATCCCCGTCGTAGG
NONE
OsAffx.13986.1.S1_at--909--10051Chr04:15410795..15410819 (25 bp)
TAGTGCATTAATCCCCGTCGTAGGA
LOC_Os04g26470
OsAffx.13986.1.S1_at--210--7311Chr04:15410793..15410817 (25 bp)
GTGCATTAATCCCCGTCGTAGGAAA
LOC_Os04g26470
OsAffx.13986.1.S1_at--1155--7191Chr04:15410779..15410803 (25 bp)
GTCGTAGGAAAATCCGTGGTCACCA
LOC_Os04g26470
OsAffx.13986.1.S1_at--278--9391Chr04:15410778..15410802 (25 bp)
TCGTAGGAAAATCCGTGGTCACCAC
LOC_Os04g26470
OsAffx.13986.1.S1_at--1141--6911Chr04:15410776..15410800 (25 bp)
GTAGGAAAATCCGTGGTCACCACAA
LOC_Os04g26470
OsAffx.13986.1.S1_at--1152--9391Chr04:15410775..15410799 (25 bp)
TAGGAAAATCCGTGGTCACCACAAC
LOC_Os04g26470
OsAffx.13986.1.S1_at--454--931Chr04:15410774..15410798 (25 bp)
AGGAAAATCCGTGGTCACCACAACA
LOC_Os04g26470
Target Sequence 
CTTCTTGAATATGAGAAAATACCTTTTCCGAACGCTAGTGCATTAATCCCCGTCGTAGGAAAATCCGTGGTCACCACAAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis