Browse Element(s) Details


OsAffx.26162.1.S1_at

Description tigr:9632.m02484
TID=OsAffx.26162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26410Os.47463.1.S1_x_at6/114+15375771..15377972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26410Os.14491.2.S1_x_at4/114+15375771..15377972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26420NANA4+15378434..15380809transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26430NANA4+15382509..15385604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26440OsAffx.26162.1.S1_at11/114+15399403..15401505expressed protein
LOC_Os04g26450OsAffx.13984.1.S1_at10/114+15403895..15404301hypothetical protein
LOC_Os04g26450OsAffx.3908.1.S1_at1/114+15403895..15404301hypothetical protein
LOC_Os04g26460OsAffx.13985.1.S1_at11/114+15407653..15407973hypothetical protein
LOC_Os04g26470OsAffx.13986.1.S1_at11/114+15410744..15411147hypothetical protein
LOC_Os04g26480OsAffx.19542.3.S1_x_at4/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26480OsAffx.9949.1.S1_at1/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26490Os.53837.1.S1_at11/114+15418641..15423259expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26162.1.S1_at--729--7351Chr04:15399433..15399457 (25 bp)
GTGACTACGACAATAGTAAAGGCTT
LOC_Os04g26440
OsAffx.26162.1.S1_at--1124--1831Chr04:15399439..15399463 (25 bp)
ACGACAATAGTAAAGGCTTCAAGGG
LOC_Os04g26440
OsAffx.26162.1.S1_at--1084--1991Chr04:15399474..15399498 (25 bp)
ACTCGTCCCAGTCTCAGGAGCGATG
LOC_Os04g26440
OsAffx.26162.1.S1_at--8--9411Chr04:15399476..15399500 (25 bp)
TCGTCCCAGTCTCAGGAGCGATGCT
LOC_Os04g26440
OsAffx.26162.1.S1_at--81--9331Chr04:15399479..15399503 (25 bp)
TCCCAGTCTCAGGAGCGATGCTGGT
LOC_Os04g26440
OsAffx.26162.1.S1_at--145--4351Chr04:15399481..15399505 (25 bp)
CCAGTCTCAGGAGCGATGCTGGTGA
LOC_Os04g26440
OsAffx.26162.1.S1_at--869--5051Chr04:15399620..15399644 (25 bp)
GCAGCGACGATGACATTGGACTGTG
LOC_Os04g26440
OsAffx.26162.1.S1_at--824--5771Chr04:15399625..15399649 (25 bp)
GACGATGACATTGGACTGTGCCGGC
LOC_Os04g26440
OsAffx.26162.1.S1_at--828--4051Chr04:15399627..15399651 (25 bp)
CGATGACATTGGACTGTGCCGGCGA
LOC_Os04g26440
OsAffx.26162.1.S1_at--551--671Chr04:15399629..15399653 (25 bp)
ATGACATTGGACTGTGCCGGCGACG
LOC_Os04g26440
OsAffx.26162.1.S1_at--559--5671Chr04:15399631..15399655 (25 bp)
GACATTGGACTGTGCCGGCGACGAC
LOC_Os04g26440
Target Sequence 
GTGACTACGACAATAGTAAAGGCTTCAAGGGGAGAGGATCCACTCGTCCCAGTCTCAGGAGCGATGCTGGTGAAGGAAAG
GCAAGGGATGGCAGTGGAGGTGCAGGATCCACCGCCCCGCCCTGCGATGGGTGGATCTATAGAGGGTGGTAAAGGAGTGC
TGAGGAGAGGCGGCAACGGCTTCTGGGGCAGCGACGATGACATTGGACTGTGCCGGCGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis