Browse Element(s) Details


OsAffx.13984.1.S1_at

Description tigr:9632.m02485
TID=OsAffx.13984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2645010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26420NANA4+15378434..15380809transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26430NANA4+15382509..15385604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26440OsAffx.26162.1.S1_at11/114+15399403..15401505expressed protein
LOC_Os04g26450OsAffx.13984.1.S1_at10/114+15403895..15404301hypothetical protein
LOC_Os04g26450OsAffx.3908.1.S1_at1/114+15403895..15404301hypothetical protein
LOC_Os04g26460OsAffx.13985.1.S1_at11/114+15407653..15407973hypothetical protein
LOC_Os04g26470OsAffx.13986.1.S1_at11/114+15410744..15411147hypothetical protein
LOC_Os04g26480OsAffx.19542.3.S1_x_at4/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26480OsAffx.9949.1.S1_at1/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26490Os.53837.1.S1_at11/114+15418641..15423259expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13984.1.S1_at--222--2751Chr04:15403970..15403994 (25 bp)
AAGAAGCATGGCTCTGGTAGCGGCA
LOC_Os04g26450
OsAffx.13984.1.S1_at--1013--2711Chr04:15403973..15403997 (25 bp)
AAGCATGGCTCTGGTAGCGGCACAG
LOC_Os04g26450
OsAffx.13984.1.S1_at--259--8251Chr04:15403991..15404015 (25 bp)
GGCACAGGAGAGGAGTCTTTTGTTC
LOC_Os04g26450
OsAffx.13984.1.S1_at--809--6011Chr04:15403998..15404022 (25 bp)
GAGAGGAGTCTTTTGTTCCAAACCA
LOC_Os04g26450
OsAffx.13984.1.S1_at--1139--8011Chr04:15404002..15404026 (25 bp)
GGAGTCTTTTGTTCCAAACCAAGAT
LOC_Os04g26450
OsAffx.13984.1.S1_at--1134--9191Chr04:15404014..15404038 (25 bp)
TCCAAACCAAGATCAGAGCACCAGT
LOC_Os04g26450
OsAffx.13984.1.S1_at--181--8491Chr04:15404038..15404062 (25 bp)
TGGCAGTGGTGTTCTGCGGAACAAC
LOC_Os04g26450
OsAffx.13984.1.S1_at--721--2191Chr04:15404058..15404082 (25 bp)
ACAACGAGTTAGAGTTCCTGGACTT
LOC_Os04g26450
OsAffx.13984.1.S1_at--12--6711Chr04:15404071..15404184 (25 bp)
GTTCCTGGACTTCGATATAACATAC
LOC_Os04g26450
OsAffx.13984.1.S1_at--47--8531Chr04:15404076..15404189 (25 bp)
TGGACTTCGATATAACATACACTTC
LOC_Os04g26450
OsAffx.13984.1.S1_at--227--10171NONE
TATAACATACACTTCGACAAAGAGG
NONE
Target Sequence 
AAGAAGCATGGCTCTGGTAGCGGCACAGGAGAGGAGTCTTTTGTTCCAAACCAAGATCAGAGCACCAGTGGCAGTGGTGT
TCTGCGGAACAACGAGTTAGAGTTCCTGGACTTCGATATAACATACACTTCGACAAAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis