Browse Element(s) Details


OsAffx.13985.1.S1_at

Description tigr:9632.m02486
TID=OsAffx.13985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2646011/11hypothetical protein
LOC_Os04g267901/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26430NANA4+15382509..15385604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g26440OsAffx.26162.1.S1_at11/114+15399403..15401505expressed protein
LOC_Os04g26450OsAffx.13984.1.S1_at10/114+15403895..15404301hypothetical protein
LOC_Os04g26450OsAffx.3908.1.S1_at1/114+15403895..15404301hypothetical protein
LOC_Os04g26460OsAffx.13985.1.S1_at11/114+15407653..15407973hypothetical protein
LOC_Os04g26470OsAffx.13986.1.S1_at11/114+15410744..15411147hypothetical protein
LOC_Os04g26480OsAffx.19542.3.S1_x_at4/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26480OsAffx.9949.1.S1_at1/114+15412915..15419448retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g26490Os.53837.1.S1_at11/114+15418641..15423259expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13985.1.S1_at--697--6271Chr04:15407880..15407904 (25 bp)
GATGTCATTCGGGTCGATGGCGCGG
LOC_Os04g26460
OsAffx.13985.1.S1_at--719--9291Chr04:15407849..15407873 (25 bp)
TCCGATGGTCTTCACTTGACAAGAA
LOC_Os04g26460
OsAffx.13985.1.S1_at--165--10511Chr04:15407839..15407863 (25 bp)
TTCACTTGACAAGAACGCACGGTTG
LOC_Os04g26460
OsAffx.13985.1.S1_at--1130--8951Chr04:15407833..15407857 (25 bp)
TGACAAGAACGCACGGTTGAGGAAG
LOC_Os04g26460
OsAffx.13985.1.S1_at--1032--5591Chr04:15407803..15407827 (25 bp)
GACAAGGGAATCGAAGGCTGACATC
LOC_Os04g26460
OsAffx.13985.1.S1_at--1065--8251Chr04:15407788..15407812 (25 bp)
GGCTGACATCGAAGGGAGACAAGTT
LOC_Os04g26460
OsAffx.13985.1.S1_at--396--9351Chr04:15407780..15407804 (25 bp)
TCGAAGGGAGACAAGTTAATGCAGC
LOC_Os04g26460
OsAffx.13985.1.S1_at--244--7251Chr04:15407749..15407773 (25 bp)
GTGCTCTGGCAAGGCGGGAGGGACT
LOC_Os04g26460
OsAffx.13985.1.S1_at--395--1452Chr04:15621063..15621087 (25 bp)
AGAAGACGGCGTTCTTCTCTGATCA
LOC_Os04g26790
OsAffx.13985.1.S1_at--119--3291Chr04:15407689..15407713 (25 bp)
CACTAGCAAGGAGGAACTTCCGGCG
LOC_Os04g26460
OsAffx.13985.1.S1_at--888--5171Chr04:15407684..15407708 (25 bp)
GCAAGGAGGAACTTCCGGCGATCTC
LOC_Os04g26460
Target Sequence 
GATGTCATTCGGGTCGATGGCGCGGGTGCGTTCCGATGGTCTTCACTTGACAAGAACGCACGGTTGAGGAAGAGGATGAC
AAGGGAATCGAAGGCTGACATCGAAGGGAGACAAGTTAATGCAGCGGGGCGGTGCTCTGGCAAGGCGGGAGGGACTGCCA
AAGGAGGAAGAAGACGGCGTTCTTCTCTGATCACTAGCAAGGAGGAACTTCCGGCGATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis