Browse Element(s) Details


Os.50361.1.S1_at

Description gb:AK109756.1
DB_XREF= gi:32994965
TID=Os.50361.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G03, full insert sequence.
FL= gb:AK109756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2679011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26730NANA4+15588832..15593586Zinc knuckle family protein
LOC_Os04g26740NANA4+15595651..15596386retrotransposon protein, putative, unclassified
LOC_Os04g26750NANA4+15602156..15607660retrotransposon, putative, centromere-specific
LOC_Os04g26790Os.50361.1.S1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.23877.1.A1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.50361.2.S1_x_at7/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.53837.1.S1_at6/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.8888.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13985.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13986.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26800OsAffx.22946.1.S1_at5/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26800OsAffx.286.1.S1_at1/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26810OsAffx.3909.1.S1_at11/114+15635953..15636949hypothetical protein
LOC_Os04g26810OsAffx.16205.1.S1_at2/114+15635953..15636949hypothetical protein
LOC_Os04g26820NANA4+15637320..15638253hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50361.1.S1_at--471--1951Chr04:15607911..15607935 (25 bp)
ACTGTAATTGTTCTGCTCTGGTTTA
LOC_Os04g26790
Os.50361.1.S1_at--960--6951Chr04:15607864..15607888 (25 bp)
GTAGAACGTCATACCATAGGCACAT
LOC_Os04g26790
Os.50361.1.S1_at--279--8251Chr04:15607846..15607870 (25 bp)
GGCACATGGTATCGACTATCAACTA
LOC_Os04g26790
Os.50361.1.S1_at--99--8531Chr04:15607734..15607758 (25 bp)
TGGAACAGCTCCTATGATCGGCAGA
LOC_Os04g26790
Os.50361.1.S1_at--246--4371Chr04:15607687..15607711 (25 bp)
CCACTCGAACTGCTGCTACTAGAGA
LOC_Os04g26790
Os.50361.1.S1_at--337--391Chr04:15607640..15607664 (25 bp)
ATCACTAACTGTTGCGGCTTTGGCG
LOC_Os04g26790
Os.50361.1.S1_at--296--8371Chr04:15607541..15607565 (25 bp)
GGCGGGACGCCAACTGCATGCGAAT
LOC_Os04g26790
Os.50361.1.S1_at--209--5291Chr04:15607520..15607544 (25 bp)
GAATGGGAGCTGTAGACCTCTTCCT
LOC_Os04g26790
Os.50361.1.S1_at--880--5671Chr04:15607494..15607518 (25 bp)
GACATTGTCCGGATTTTGGCTCTTC
LOC_Os04g26790
Os.50361.1.S1_at--372--10851Chr04:15607469..15607493 (25 bp)
TTGGTGCTGGACGACCTTGGAGCAT
LOC_Os04g26790
Os.50361.1.S1_at--285--5931Chr04:15607450..15607474 (25 bp)
GAGCATTGCGCTCTCGACCTTGAGA
LOC_Os04g26790
Target Sequence 
ACTGTAATTGTTCTGCTCTGGTTTAAAACACACTAAAAAATCCTTAAGTAGAACGTCATACCATAGGCACATGGTATCGA
CTATCAACTAAACCCCACAAGCAAACACACCTAAACACAAAAATCTACCAAGCAATGAGTAAACAAAACGGTAAACTAGG
GTAGCAAGCCTAATGCTTGGAACAGCTCCTATGATCGGCAGAGACGACATCGTCTTCTTCATCACCACTCGAACTGCTGC
TACTAGAGATTGACACGATCCACTTCACTGCATCACTAACTGTTGCGGCTTTGGCGGCGGAGAGCATCGGCAACTGCGAA
GACGCGCGAACTGGGACGGGAACGGGATCGACGGCTAGGACATCGACTGGGGCGGGACGCCAACTGCATGCGAATGGGAG
CTGTAGACCTCTTCCTCGACATTGTCCGGATTTTGGCTCTTCTTGGTGCTGGACGACCTTGGAGCATTGCGCTCTCGACC
TTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis