Browse Element(s) Details


Os.23877.1.A1_at

Description gb:CA760746
DB_XREF= gi:25804785
DB_XREF=BR060007B10E03.ab1
CLONE=BR060007B10E03.ab1
TID=Os.23877.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23877 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2679011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26730NANA4+15588832..15593586Zinc knuckle family protein
LOC_Os04g26740NANA4+15595651..15596386retrotransposon protein, putative, unclassified
LOC_Os04g26750NANA4+15602156..15607660retrotransposon, putative, centromere-specific
LOC_Os04g26790Os.50361.1.S1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.23877.1.A1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.50361.2.S1_x_at7/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.53837.1.S1_at6/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.8888.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13985.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13986.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26800OsAffx.22946.1.S1_at5/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26800OsAffx.286.1.S1_at1/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26810OsAffx.3909.1.S1_at11/114+15635953..15636949hypothetical protein
LOC_Os04g26810OsAffx.16205.1.S1_at2/114+15635953..15636949hypothetical protein
LOC_Os04g26820NANA4+15637320..15638253hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23877.1.A1_at--877--3131Chr04:15617055..15617079 (25 bp)
AATTCACACCAGAGTTGAACCCATG
LOC_Os04g26790
Os.23877.1.A1_at--513--3431Chr04:15617046..15617070 (25 bp)
CAGAGTTGAACCCATGAGCTAGTAG
LOC_Os04g26790
Os.23877.1.A1_at--652--5912Chr04:15617031..15617055 (25 bp)
GAGCTAGTAGGTGCTACCATGCATA
LOC_Os04g26790
Os.23877.1.A1_at--986--1031Chr04:15617023..15617047 (25 bp)
AGGTGCTACCATGCATAAAAGTGTA
LOC_Os04g26790
Os.23877.1.A1_at--213--2871Chr04:15617005..15617029 (25 bp)
AAGTGTAAATACTAGGCTGCATACC
LOC_Os04g26790
Os.23877.1.A1_at--696--3571Chr04:15616980..15617004 (25 bp)
CATTCACAACGACGGTTGCCCATAT
LOC_Os04g26790
Os.23877.1.A1_at--497--5752Chr04:15616970..15616994 (25 bp)
GACGGTTGCCCATATTTTCTTGGAG
LOC_Os04g26790
Os.23877.1.A1_at--537--4551Chr04:15616963..15616987 (25 bp)
GCCCATATTTTCTTGGAGGCATGCT
LOC_Os04g26790
Os.23877.1.A1_at--195--7972Chr04:15616931..15616955 (25 bp)
GGATCTAACATGTGATCAACCGTGC
LOC_Os04g26790
Os.23877.1.A1_at--931--2491Chr04:15616925..15616949 (25 bp)
AACATGTGATCAACCGTGCACGGAC
LOC_Os04g26790
Os.23877.1.A1_at--509--8831Chr04:15616919..15616943 (25 bp)
TGATCAACCGTGCACGGACGTGCTC
LOC_Os04g26790
Target Sequence 
AATTCACACCAGAGTTGAACCCATGAGCTAGTAGGTGCTACCATGCATAAAAGTGTAAATACTAGGCTGCATACCCATTC
ACAACGACGGTTGCCCATATTTTCTTGGAGGCATGCTTTAATGGGGATCTAACATGTGATCAACCGTGCACGGACGTGCT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23877.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis