Browse Element(s) Details


OsAffx.3909.1.S1_at

Description tigr:9632.m02521
TID=OsAffx.3909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2681011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26790Os.50361.1.S1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.23877.1.A1_at11/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.50361.2.S1_x_at7/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790Os.53837.1.S1_at6/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.8888.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13985.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26790OsAffx.13986.1.S1_at1/114+15607393..15629062Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g26800OsAffx.22946.1.S1_at5/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26800OsAffx.286.1.S1_at1/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26810OsAffx.3909.1.S1_at11/114+15635953..15636949hypothetical protein
LOC_Os04g26810OsAffx.16205.1.S1_at2/114+15635953..15636949hypothetical protein
LOC_Os04g26820NANA4+15637320..15638253hypothetical protein
LOC_Os04g26834Os.19426.1.S1_at11/114+15657201..15666302aspartyl protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3909.1.S1_at--595--10831Chr04:15635992..15636016 (25 bp)
TTGTGGAAGTATAGCGACGAACGTT
LOC_Os04g26810
OsAffx.3909.1.S1_at--615--5791Chr04:15636007..15636031 (25 bp)
GACGAACGTTGTCGTTGGCACACTT
LOC_Os04g26810
OsAffx.3909.1.S1_at--1059--8491Chr04:15636022..15636046 (25 bp)
TGGCACACTTTCAGTTCAGTCCAAG
LOC_Os04g26810
OsAffx.3909.1.S1_at--429--9651Chr04:15636032..15636056 (25 bp)
TCAGTTCAGTCCAAGCAAATGTGCA
LOC_Os04g26810
OsAffx.3909.1.S1_at--530--2291Chr04:15636048..15636072 (25 bp)
AAATGTGCACTCTGCGTACATGCGA
LOC_Os04g26810
OsAffx.3909.1.S1_at--1131--7011Chr04:15636063..15636087 (25 bp)
GTACATGCGATCAGATGAACTCAAG
LOC_Os04g26810
OsAffx.3909.1.S1_at--746--5792Chr04:15641001..15641025 (25 bp)
GACGCAGATAAACTCACTGATGTCA
NONE
OsAffx.3909.1.S1_at--599--132Chr04:15641028..15641052 (25 bp)
ATTAGAGTGGATCCTCCCAAGTTGC
NONE
OsAffx.3909.1.S1_at--81--3232Chr04:15641045..15641069 (25 bp)
CAAGTTGCTCGTTCAGGCTCATGGG
NONE
OsAffx.3909.1.S1_at--167--8112Chr04:15640208..15640232 (25 bp)
GGACACGGACAACACAATCGACGAC
NONE
OsAffx.3909.1.S1_at--1062--373Chr04:15636810..15636834 (25 bp)
ATCAACACACCTACCACAATATACG
LOC_Os04g26810
Target Sequence 
TTGTGGAAGTATAGCGACGAACGTTGTCGTTGGCACACTTTCAGTTCAGTCCAAGCAAATGTGCACTCTGCGTACATGCG
ATCAGATGAACTCAAGGAGACAGACGCAGATAAACTCACTGATGTCAAGATTAGAGTGGATCCTCCCAAGTTGCTCGTTC
AGGCTCATGGGGATCAATCTGAAGATCAGGAGACACCTATGAGTATAAATACAAGACCCCCTAGGAGGAGAGGGGACACG
GACAACACAATCGACGACCACCACAATCAACACACCTACCACAATATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis