Browse Element(s) Details


OsAffx.5335.1.S1_at

Description tigr:9630.m02926
TID=OsAffx.5335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box protein interaction domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3057011/11F-box protein interaction domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30530Os.51332.1.S1_at10/112+18157101..18160997transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g30540OsAffx.24512.1.S1_at11/112+18167489..18172501Leucine Rich Repeat family protein
LOC_Os02g30550OsAffx.12292.1.S1_x_at11/112+18175992..18176204hypothetical protein
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30590OsAffx.2810.1.S1_at11/112+18203314..18203817hypothetical protein
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5335.1.S1_at--180--5871Chr02:18182499..18182593 (25 bp)
GAGCCGGTACAGCTACATATGCAGA
LOC_Os02g30570
OsAffx.5335.1.S1_at--385--7031Chr02:18182505..18182599 (25 bp)
GTACAGCTACATATGCAGAGGGAAA
LOC_Os02g30570
OsAffx.5335.1.S1_at--837--1051Chr02:18182593..18182617 (25 bp)
AGGGAAAATGTCAGTGTCCGGAAGA
LOC_Os02g30570
OsAffx.5335.1.S1_at--394--2491Chr02:18183720..18183744 (25 bp)
AACAGAGGGAGTATTTGGCTATAAA
LOC_Os02g30570
OsAffx.5335.1.S1_at--346--10351Chr02:18183745..18183769 (25 bp)
TTTTCCAATTGGTGTATTCCGTGTA
LOC_Os02g30570
OsAffx.5335.1.S1_at--589--7751Chr02:18183755..18183779 (25 bp)
GGTGTATTCCGTGTATTTCTTGAAC
LOC_Os02g30570
OsAffx.5335.1.S1_at--439--9292Chr02:18183762..18183785 (24 bp)
TCCGTGTATTTCTTGAACTTTACAT
LOC_Os02g30570
OsAffx.5335.1.S1_at--375--2531Chr02:18183777..18184049 (25 bp)
AACTTTACATTCCTGACACCGACGA
LOC_Os02g30570
OsAffx.5335.1.S1_at--914--2071Chr02:18184034..18184055 (22 bp)
ACATTCCTGACACCGACGAGGGTCT
LOC_Os02g30570
OsAffx.5335.1.S1_at--50--4791Chr02:18184088..18184112 (25 bp)
GCTGCGCCACGGACGTGGTAGACAT
LOC_Os02g30570
OsAffx.5335.1.S1_at--630--1911Chr02:18184100..18184124 (25 bp)
ACGTGGTAGACATCGGCGGCGGGCG
LOC_Os02g30570
Target Sequence 
GAGCCGGTACAGCTACATATGCAGAGGGAAAATGTCAGTGTCCGGAAGAAAAATGGCATAGAGAAAGGCATGGGGAAACA
GAGGGAGTATTTGGCTATAAATTTTCCAATTGGTGTATTCCGTGTATTTCTTGAACTTTACATTCCTGACACCGACGAGG
GTCTCACGGCGGCGGCGGACACAGGAGATGGTGGCGGCTGCGCCACGGACGTGGTAGACATCGGCGGCGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis