Browse Element(s) Details


OsAffx.12293.1.S1_at

Description tigr:9630.m02925
TID=OsAffx.12293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30520NANA2+18153175..18156347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30530Os.51332.1.S1_at10/112+18157101..18160997transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g30540OsAffx.24512.1.S1_at11/112+18167489..18172501Leucine Rich Repeat family protein
LOC_Os02g30550OsAffx.12292.1.S1_x_at11/112+18175992..18176204hypothetical protein
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30590OsAffx.2810.1.S1_at11/112+18203314..18203817hypothetical protein
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12293.1.S1_at--339--7611Chr02:18180717..18180741 (25 bp)
GGGAAGGAGGACCAGGCGGTGGCTT
LOC_Os02g30560
OsAffx.12293.1.S1_at--390--3811Chr02:18180684..18180708 (25 bp)
CTCCGGCCGAGCAGCAGCATGTTGT
LOC_Os02g30560
OsAffx.12293.1.S1_at--920--8411Chr02:18180680..18180704 (25 bp)
GGCCGAGCAGCAGCATGTTGTCCCA
LOC_Os02g30560
OsAffx.12293.1.S1_at--726--4071Chr02:18180677..18180701 (25 bp)
CGAGCAGCAGCATGTTGTCCCAGGG
LOC_Os02g30560
OsAffx.12293.1.S1_at--119--1511Chr02:18180675..18180699 (25 bp)
AGCAGCAGCATGTTGTCCCAGGGTC
LOC_Os02g30560
OsAffx.12293.1.S1_at--870--1511Chr02:18180672..18180696 (25 bp)
AGCAGCATGTTGTCCCAGGGTCCCG
LOC_Os02g30560
OsAffx.12293.1.S1_at--761--3511Chr02:18180667..18180691 (25 bp)
CATGTTGTCCCAGGGTCCCGGGAGA
LOC_Os02g30560
OsAffx.12293.1.S1_at--68--3371Chr02:18180657..18180681 (25 bp)
CAGGGTCCCGGGAGACCGGCAGAAG
LOC_Os02g30560
OsAffx.12293.1.S1_at--611--3971Chr02:18180649..18180673 (25 bp)
CGGGAGACCGGCAGAAGACGACGGC
LOC_Os02g30560
OsAffx.12293.1.S1_at--288--8431Chr02:18180607..18180631 (25 bp)
GGCCGGCTTGGCCATGCGGAGGCAG
LOC_Os02g30560
OsAffx.12293.1.S1_at--422--8351Chr02:18180577..18180601 (25 bp)
GGCGGTGCCCCGGTTGGCGACAGTG
LOC_Os02g30560
Target Sequence 
GGGAAGGAGGACCAGGCGGTGGCTTCGGTGGCTCTCCGGCCGAGCAGCAGCATGTTGTCCCAGGGTCCCGGGAGACCGGC
AGAAGACGACGGCGGAGGCGGCGCTCGCGCGGCCGGCTTGGCCATGCGGAGGCAGCGCGTGGCGGTGCCCCGGTTGGCGA
CAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis