Browse Element(s) Details


OsAffx.12292.1.S1_x_at

Description tigr:9630.m02924
TID=OsAffx.12292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3055011/11hypothetical protein
LOC_Os01g698901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30510OsAffx.8166.1.S1_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30510OsAffx.20387.1.S1_x_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30520NANA2+18153175..18156347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30530Os.51332.1.S1_at10/112+18157101..18160997transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g30540OsAffx.24512.1.S1_at11/112+18167489..18172501Leucine Rich Repeat family protein
LOC_Os02g30550OsAffx.12292.1.S1_x_at11/112+18175992..18176204hypothetical protein
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12292.1.S1_x_at--838--4671Chr02:18176022..18176046 (25 bp)
GCGGTGATACTGTTCATCCTGCTGT
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--887--3631Chr02:18176055..18176079 (25 bp)
CTTCTGTTCCAGGTGCCGGCGAGGA
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--771--10591Chr02:18176056..18176080 (25 bp)
TTCTGTTCCAGGTGCCGGCGAGGAC
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--161--9411Chr02:18176057..18176081 (25 bp)
TCTGTTCCAGGTGCCGGCGAGGACG
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--182--1872Chr02:18176079..18176103 (25 bp)
ACGAGGGTGGTGGAGTTCGGCAACA
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--488--10611Chr02:18176094..18176118 (25 bp)
TTCGGCAACATGTGCACCAGCGGCG
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--374--9451Chr02:18176095..18176119 (25 bp)
TCGGCAACATGTGCACCAGCGGCGT
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--435--3951Chr02:18176096..18176120 (25 bp)
CGGCAACATGTGCACCAGCGGCGTC
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--879--8231Chr02:18176097..18176121 (25 bp)
GGCAACATGTGCACCAGCGGCGTCT
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--382--5151Chr02:18176098..18176122 (25 bp)
GCAACATGTGCACCAGCGGCGTCTC
LOC_Os02g30550
OsAffx.12292.1.S1_x_at--12--2511Chr02:18176100..18176124 (25 bp)
AACATGTGCACCAGCGGCGTCTCCG
LOC_Os02g30550
Target Sequence 
GCGGTGATACTGTTCATCCTGCTGTCGCCGGGGCTTCTGTTCCAGGTGCCGGCGAGGACGAGGGTGGTGGAGTTCGGCAA
CATGTGCACCAGCGGCGTCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12292.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis