Browse Element(s) Details


Os.12108.1.S1_at

Description gb:AU096050
DB_XREF= gi:8858732
DB_XREF=AU096050
CLONE=S11970
TID=Os.12108.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.12108 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0401010/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03970Os.7266.1.S1_at11/112+1708916..1716927Ipomoea nil leaf protein, putative, expressed
LOC_Os02g03980OsAffx.11884.1.S1_at11/112+1719673..1720857F-box protein interaction domain containing protein
LOC_Os02g03990OsAffx.2499.1.S1_at11/112+1723476..1727642transducin family protein, putative
LOC_Os02g04000OsAffx.11884.1.S1_at11/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04000OsAffx.24088.2.S1_at1/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04010Os.26853.1.A1_at11/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04010Os.12108.1.S1_at10/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04020Os.7324.1.S1_at11/112+1743661..1748216phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os02g04030Os.9614.1.S1_at11/112+1748459..1753225Phosphatidylinositol/phosphatidylcholine transfer protein, putative, expressed
LOC_Os02g04040Os.21109.1.S1_at5/112+1754861..1757771SMC family, C-terminal domain containing protein, expressed
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12108.1.S1_at--144--6331Chr02:1736766..1736790 (25 bp)
GATGCAATGGCCGATCCAGGATCAA
LOC_Os02g04010
Os.12108.1.S1_at--497--7951Chr02:1736747..1736772 (25 bp)
GGATCAAAATCCCAACCTGCGGAGA
LOC_Os02g04010
Os.12108.1.S1_at--662--3471NONE
CAGGTCATAAACGTGGCTCTGCCAC
NONE
Os.12108.1.S1_at--451--4371Chr02:1736634..1736658 (25 bp)
CCACTGCTCCTATCCACAAAAATAT
LOC_Os02g04010
Os.12108.1.S1_at--584--10831Chr02:1736567..1736591 (25 bp)
TTGGGCTAGAAAGCTCTACGCACTC
LOC_Os02g04010
Os.12108.1.S1_at--1003--2011Chr02:1736493..1736517 (25 bp)
ACTAACTTCATTTCTTACTTGTGTA
LOC_Os02g04010
Os.12108.1.S1_at--637--10391Chr02:1736438..1736462 (25 bp)
TTATCCGTTGGATCCTAACATTACC
LOC_Os02g04010
Os.12108.1.S1_at--1138--131Chr02:1736419..1736443 (25 bp)
ATTACCTGACTATGTACCATCCTCT
LOC_Os02g04010
Os.12108.1.S1_at--797--10431Chr02:1736390..1736414 (25 bp)
TTAGTCGAGGGTAGTGTAGTCACGT
LOC_Os02g04010
Os.12108.1.S1_at--111--5951Chr02:1736286..1736310 (25 bp)
GAGCACTGTTGATTGGATCATTCCT
LOC_Os02g04010
Os.12108.1.S1_at--761--3591Chr02:1736268..1736292 (25 bp)
CATTCCTTATGTGGTGTACTGGTCG
LOC_Os02g04010
Target Sequence 
GATGCAATGGCCGATCCAGGATCAAAATCCCAACCTGCGGAGAATGTATCAAAAGATTATATATTTCAGTTTCAATGCAA
ATATGAGAAATTATGGGGTTAGTTGACCCCGCAGGTCATAAACGTGGCTCTGCCACTGCTCCTATCCACAAAAATATAAC
TATGTATAAAACAATCTATATTTGCCACCATNNNAAAACNTCNTTGGGCTAGAAAGCTCTACGCACTCCATTNGAGGGTA
AAGGTGTTAACACTTACTTNTTTTTAACCATGTCGTATAACTAACTTCATTTCTTACTTGTGTAGATGTTTTCGGAAGTT
AAAACTTCCTATTTTTATCCGTTGGATCCTAACATTACCTGACTATGTACCATCCTCTGGGGTTAGTCGAGGGTAGTGTA
GTCACGTGGGTTGTTAAGAAAATTACACCGGCATGGATATATGGATACATACAAGCTGGTTTGATGTAAATGTGTATAAT
CATTTGGAGCACTGTTGATTGGATCATTCCTTATGTGGTGTACTGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis